Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10220 ATGGAATCGAAAAACCCTACTGGGTTCAAGCTTGGGAAACAGTTATTGGAACAAGATGAACTTCACGATGCTGATGCTGATGCTACTATTCACCCTGGAGTGAGGTTGATGTATTCCGCAAACGAAGGTGATGTTGATGGAATTCGTGACTTGCTTGAATCAGGTGAGAGAGTGGATTTTAGGGATATTGATGGACGCACTGCTCTTCATATTGCTGCTTGTCAGGGCTCAACTCACGTTGTTGATTTGTTGCTTCAGTATGGTGCGAATCTTGATCCTAAAGATCGATGGGGAAACACCCCCCTTGCAGATGCTATATTCTATGAAAACAGTGACGTGATCAAACTATTGGAGAATCATGGCGCAATGCCTCTGATGGCATCCATGCATGTTCATCATGCACGTGAAGTCCCTGAATATGAAATCGATCCTAAAGAACTTGATTTTACCAACAGTGTTGAGATAACAAAGGGGACTTTCTGTATTGCGTTGTGGCGTGGGACCGAGGTTGCGGTAAAAAAGCTCGCGGATGCCGTCTTAATTAATGAGGAGAAAGTGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATTCGTCATCCAAATGTACTCCAATTTCTTGGTGCTGTGACACAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGGTTTCATGATAAGAAAAGGAGCTTTAAAACCAAGTACAGCTGTTAGATTTGCACTTGATATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAACCATCACCCATTATTCACCGTGATCTCGAGCCTTCTAATATATTGAGGGATGATTTCGGCCACCTAAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTAACAGTTAAAGACAAGCCTCTAACTTTCCAAGATACTTCTTGCCGCTATGTGGCTCCTGAGGTTTTTAATCAAGAGGAATATGACACTAAAGTGGATGTGTTCTCATTTGCACTAATTCTACAAGAGATGATTGAAGGCTGCCCTCCTTTTTCTGCAGAGCGTGAGGATGAGGTTCCTAAGGTTTATGCCTCAAAAGAGAGACCACCCTTCCGAGCTCCTACTAAGCATTATTCTCATGGAATTCGAAAGTTGATTAAAGAGTGTTGGAAAGAGAATCCAGCAAAGAGACCAACATTCAGACAAATAATAAAAAGGCTGGAATCCATCTACAAAACAATTGGTCAAAAAGGATGTTGGAAGGTTAAAACATTGAGGTGCTTTCCGAATCTGGAAGCTTTGTTGAAGAGAGATCGCCTGAAATTAAGCATTCGGGGCAGTTCATCTTGCCCCTCTACCAGTCGGATATGA 1353 0.425 MESKNPTGFKLGKQLLEQDELHDADADATIHPGVRLMYSANEGDVDGIRDLLESGERVDFRDIDGRTALHIAACQGSTHVVDLLLQYGANLDPKDRWGNTPLADAIFYENSDVIKLLENHGAMPLMASMHVHHAREVPEYEIDPKELDFTNSVEITKGTFCIALWRGTEVAVKKLADAVLINEEKVKAFRDELALFQKIRHPNVLQFLGAVTQSSPMMIVTEYLPKGDLRGFMIRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDFGHLKVADFGVSKLLTVKDKPLTFQDTSCRYVAPEVFNQEEYDTKVDVFSFALILQEMIEGCPPFSAEREDEVPKVYASKERPPFRAPTKHYSHGIRKLIKECWKENPAKRPTFRQIIKRLESIYKTIGQKGCWKVKTLRCFPNLEALLKRDRLKLSIRGSSSCPSTSRI 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10220 450 Gene3D Transferase(Phosphotransferase) domain 1 225 420 - -
Vifa1g10220 450 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 113 404 - -
Vifa1g10220 450 SUPERFAMILY Ankyrin repeat 35 124 IPR036770 -
Vifa1g10220 450 FunFam Os01g0748600 protein 135 421 - -
Vifa1g10220 450 FunFam serine/threonine-protein kinase STY46-like 142 225 - -
Vifa1g10220 450 ProSiteProfiles Protein kinase domain profile. 114 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10220 450 Pfam Protein tyrosine and serine/threonine kinase 167 401 IPR001245 GO:0004672|GO:0006468
Vifa1g10220 450 Gene3D - 10 137 IPR036770 -
Vifa1g10220 450 ProSiteProfiles Ankyrin repeat region circular profile. 64 96 - -
Vifa1g10220 450 Gene3D Phosphorylase Kinase; domain 1 141 224 - -
Vifa1g10220 450 CDD STKc_MAP3K-like 155 401 - -
Vifa1g10220 450 PIRSF ILK 3 423 - -
Vifa1g10220 450 SUPERFAMILY Protein kinase-like (PK-like) 154 402 IPR011009 -
Vifa1g10220 450 FunFam Integrin-linked protein kinase family 13 140 - -
Vifa1g10220 450 SMART ANK_2a 97 126 IPR002110 GO:0005515
Vifa1g10220 450 SMART ANK_2a 64 93 IPR002110 GO:0005515
Vifa1g10220 450 Pfam Ankyrin repeats (3 copies) 36 122 IPR002110 GO:0005515
Vifa1g10220 450 ProSiteProfiles Ankyrin repeat profile. 64 96 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10220 Vifa-Chr1 1701650287 1701657138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10220 30 422 MAP Kinase Kinase Kinase AT4G18950 68.528 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vifa1g10220 PK_Tyr_Ser-Thr 3.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10220 - - gmx:100790126 716.072