Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10215 ATGAGCATTGATGTTTCTATAGAGCAATTGAAAGGGCTTATTTCTTTTTTCGAAAAATACAGGGAATATGGTTTTGAAAATGTCATAATTTCGGCTAAAGAAATTGCTATCGAAATAGATATAGAACCTAAGTTTCGTGAAAAACGTATTATTCGTAGAAAGAGACAATTTGATGAGATTATTGACAATGAATGGAAAAGAAGAGAGAAAGGGAAAGAAAGAAAAAAACATCAAGCTATTGCTGAAACATCTCTCTTCTGTTCTATCCTTAATTATATTCTCCTTTTGTTTCCTCTCCAAAGCTTGGAAGCCATGGCTTTTCCAAATCAATCCATGTCAGATTCTCCACAGAGAAAGATGGGAAGGGGAAAGATTGAGATCAAGAGGATTGAAAACACAACGAATCGCCAAGTAACTTTCTGCAAACGCCGAAACGGCTTACTCAAAAAAGCTTATGAACTATCTGTTCTTTGTGATGCAGAAGTTGCTCTTATAGTCTTCTCTAGCCGCGGTCGCCTCTACGAATATGCCAATAACAGTGTGAAAGCAACAATTGAAAGGTACAAAAAAGCATGTTCAGATTCATCTGGCACTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAACAAGAAGCTGAAAAATTGCGTGTTCAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAATCTCTAGGATCTATGAATGCCAAGGAACTCAAAAATCTGGAGTCTAAATTAGAAAAAGGAATAAGTAGAATTCGTTCCAAAAAGAATGAGCTGTTATTTGCTGAAATTGAATACATGCAGAAGAGGGAGATAGATTTGCATAATAACAACCAACTTTTGAGAGCAAAGATAGCTGAAAGTGAGAGGAACCACCACCATAATATTAACATGAGTGTGTTACCTGGAGGCACAAACTATGAATCCATGCAATCTCAAACTCAGCAGCAATATGATTCTCGCGGATACTTTCAAGTTTCTGGATTACAATCCAGTAGTAGTCAGTACGGACGACAAGACCAAATGTCTCTTCAATTAGTTTGA 1059 0.3702 MSIDVSIEQLKGLISFFEKYREYGFENVIISAKEIAIEIDIEPKFREKRIIRRKRQFDEIIDNEWKRREKGKERKKHQAIAETSLFCSILNYILLLFPLQSLEAMAFPNQSMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGTGSASEANAQFYQQEAEKLRVQISNLQNNNRQMMGESLGSMNAKELKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHHHNINMSVLPGGTNYESMQSQTQQQYDSRGYFQVSGLQSSSSQYGRQDQMSLQLV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10215 352 ProSiteProfiles K-box domain profile. 206 296 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g10215 352 PANTHER SERUM RESPONSE FACTOR HOMOLOG 120 311 - -
Vifa1g10215 352 FunFam agamous-like MADS-box protein AGL11 132 215 - -
Vifa1g10215 352 SMART madsneu2 120 179 IPR002100 GO:0003677|GO:0046983
Vifa1g10215 352 Gene3D - 132 198 IPR036879 GO:0003677|GO:0046983
Vifa1g10215 352 ProSiteProfiles MADS-box domain profile. 120 180 IPR002100 GO:0003677|GO:0046983
Vifa1g10215 352 Coils Coil 206 233 - -
Vifa1g10215 352 Coils Coil 243 263 - -
Vifa1g10215 352 PRINTS MADS domain signature 122 142 IPR002100 GO:0003677|GO:0046983
Vifa1g10215 352 PRINTS MADS domain signature 157 178 IPR002100 GO:0003677|GO:0046983
Vifa1g10215 352 PRINTS MADS domain signature 142 157 IPR002100 GO:0003677|GO:0046983
Vifa1g10215 352 CDD MADS_MEF2_like 121 195 IPR033896 GO:0000977|GO:0045944
Vifa1g10215 352 MobiDBLite consensus disorder prediction 303 323 - -
Vifa1g10215 352 MobiDBLite consensus disorder prediction 297 323 - -
Vifa1g10215 352 SUPERFAMILY SRF-like 121 192 IPR036879 GO:0003677|GO:0046983
Vifa1g10215 352 Pfam K-box region 203 290 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g10215 352 ProSitePatterns MADS-box domain signature. 122 176 IPR002100 GO:0003677|GO:0046983
Vifa1g10215 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 129 176 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10215 Vifa-Chr1 1699430845 1699440349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10215 118 352 MADS-box Gene Family AT3G58780 68.220 8.00e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa1g10215 K-box 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10215 K09264 - gmx:732595 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10215 1 1699430845 1699440349 Vifa1g10215 1 1699430845 1699440349 ECH
Vifa1g10215 1 1699430845 1699440349 Vifa1g10215 1 1699430845 1699440349 PCT