Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10212 ATGGAATCGAAAAACCCTACTAGGTTGATGTATTCGGTGAATGAAGGTGATGTTGATGGGATTCGTGAGGTGTTGGAATCGGGTGTGAGTGTTAATTTTAGAGATGTTGATGGACGTACGGCTCTTCATATTGCGGCTTGTCAGGGGTTGACTCATGTTGTTGATTTGTTGCTTGTGAATGGGGCTGATGTTGATCCTAAAGATCGATGGGGGAGCACGCCCCTTGCAGATGCTATATTCTATAAAAACAATGACGTGATCAAACTATTGGAAAATCATGGAGCAAAGCCTCTGATGACCTCTATGCATGTTAATCATGCACGTGATGTCCCGGAATATGAAATCAATCCTAAAGAACTTGATTTTACCAACAGTAAGGAAATAACAAAGGGGACTTTCTGTATTGCGTTGTGGCGTGGGACCGAGGTTGCAGTAAAAAAGCTCGGGGATGAGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATTCGTCATCCAAATATCTCATTTCAGCACGTTGTGCAGGAAAATGTTAGATTTGCACTTGATATTGCTAGAGCGTGAGGACGGGGTTCCTATGGTTTATGCCTAA 591 0.4315 MESKNPTRLMYSVNEGDVDGIREVLESGVSVNFRDVDGRTALHIAACQGLTHVVDLLLVNGADVDPKDRWGSTPLADAIFYKNNDVIKLLENHGAKPLMTSMHVNHARDVPEYEINPKELDFTNSKEITKGTFCIALWRGTEVAVKKLGDELSEMSLLCSRRFVIQISHFSTLCRKMLDLHLILLEREDGVPMVYA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10212 196 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 7 90 IPR039323 -
Vifa1g10212 196 ProSiteProfiles Ankyrin repeat profile. 37 69 IPR002110 GO:0005515
Vifa1g10212 196 SMART ANK_2a 70 99 IPR002110 GO:0005515
Vifa1g10212 196 SMART ANK_2a 4 33 IPR002110 GO:0005515
Vifa1g10212 196 SMART ANK_2a 37 66 IPR002110 GO:0005515
Vifa1g10212 196 Pfam Ankyrin repeats (3 copies) 9 99 IPR002110 GO:0005515
Vifa1g10212 196 ProSiteProfiles Ankyrin repeat region circular profile. 37 69 - -
Vifa1g10212 196 FunFam Integrin-linked protein kinase family 1 113 - -
Vifa1g10212 196 SUPERFAMILY Ankyrin repeat 7 101 IPR036770 -
Vifa1g10212 196 Gene3D - 1 114 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10212 Vifa-Chr1 1698210882 1698214975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10212 8 152 MAP Kinase Kinase Kinase AT4G18950 71.034 4.28e-73 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10212 - - gmx:100790126 252.677