Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10210 ATGGCTTGTGAGACTAAAACGTTGTTGATTTTTCCTCTTCTTTTCTTGGCTGCATGCTACATGCAACAACGTGTCTATGGAAAATCTCAAATGCCATGTCTTTTTATTTTTGGTGACTCTTTATCTGATAGTGGAAACAACAATAATCTTGTTACACTTTCAAAAGTTAATTACAAACCATATGGCATCGACTTTCCAACAGGACCAACAGGAAGGTTTTCTAATGGACTAACATCAATTGACATTCTTGCTCAACTTTTAGGATTTGAAGATTTCATTCCCCCCTTTGCAAATACCATGGGCTCAAATATATTGAAAGGTGTTAACTATGCATCTGGATCTGCTGGAATTCGCAACGAGACCGGAAAACATTTGGGTGCTGATATTGACTTGGGATTACAGTTACAAAATCACAAAACCATAATTGCTCGATTTGCAATTATGCTTGGTGGTGCTCAACAAGCTTCGCAATATCTAAATGAGTGCTTGTATTATGTAAATATAGGCAGCAACGATTATATAAATAATTATTTTCTTCCTCAATTCTATTCAACTAGTCGCGTCTATAGCCCTAATCAGTATGCTCAAGATCTTATCGGCCGATTATCTCAATCTATAAAGATTTTACATAATGCTGGTGCAAGAAAAATGGTGCTAGTTGGGCCAGGACCTATAGGTTGCACTCCAAATGCCATTGCTACTCATGGATCATGTATTCAAGAGCAGAATGCTGCTGCATTAATTTTTAGTAGAAAACTTAAATCTCTTGTGGATAGACTCAATAGGAAATTCACTGGTTCTAAATTCATCTTTAGAAACAGTACAACAGATTTCTATGCTAGTATAAATCGTTTTAGAGTTTCGAATGCTGCTTGCTGTCGATTGGTATTGAATTCGTTGTGTGCTCTTCAACAAACTCCATGTGAGAATAGAAACGAATATATGTTTTGGGATGGATTTCATCCGACTTCAGCTGCGAATAAACTTACGGCATTGCGTTCATACAATTCTTCAAATCCAGACTTCGTATACCCAATGAATGTTCAACATCTTATTCAGTCATGA 1065 0.3653 MACETKTLLIFPLLFLAACYMQQRVYGKSQMPCLFIFGDSLSDSGNNNNLVTLSKVNYKPYGIDFPTGPTGRFSNGLTSIDILAQLLGFEDFIPPFANTMGSNILKGVNYASGSAGIRNETGKHLGADIDLGLQLQNHKTIIARFAIMLGGAQQASQYLNECLYYVNIGSNDYINNYFLPQFYSTSRVYSPNQYAQDLIGRLSQSIKILHNAGARKMVLVGPGPIGCTPNAIATHGSCIQEQNAAALIFSRKLKSLVDRLNRKFTGSKFIFRNSTTDFYASINRFRVSNAACCRLVLNSLCALQQTPCENRNEYMFWDGFHPTSAANKLTALRSYNSSNPDFVYPMNVQHLIQS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10210 354 Pfam GDSL-like Lipase/Acylhydrolase 34 331 IPR001087 GO:0016788
Vifa1g10210 354 CDD SGNH_plant_lipase_like 32 338 IPR035669 -
Vifa1g10210 354 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vifa1g10210 354 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 13 351 - -
Vifa1g10210 354 Gene3D SGNH hydrolase 19 339 IPR036514 -
Vifa1g10210 354 SUPERFAMILY SGNH hydrolase 34 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10210 Vifa-Chr1 1698046451 1698047955 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10210 31 354 Acyl Lipid Metabolism Gene Families AT4G10950 32.941 1.58e-55 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10210 - - gmx:100791146 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10210 1 1698046451 1698047955 Vifa1g10210 1 1698046451 1698047955 ECH
Vifa1g10210 1 1698046451 1698047955 Vifa1g07866 1 1227461786 1227463876 PCT
Vifa1g07865 1 1227429563 1227431657 Vifa1g10210 1 1698046451 1698047955 PCT