Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10208 ATGAAGAGGCAATTGGGATTCAACGGTTACATATCGTCGTATGCATCGGCTAGAGGCCGAGACATACTAAGAGGAGTCAATTATGCTTCGGCAGCTGCTGGAATTAGAGAGGAAACTGGACGACAATTGGGACAGAGAATTAGTTTTAGAGGTCAAGTGGTAAATTATCAAAGGACAGTGTCTCAGTTAGTAAATAATTTTGGAGATGAGAATAATACTGTGAATTATCTAAGCAAATGCATTTATACAATTGGATTGGGAAGTAATGATTACCTTAACAACTATTTCATGCCTCAAATCTATTCTAGCAGTAGACAATTCACACCACAACAGTATGCTAATGTTCTTCTTCAAGCATATGCTCAACAACTCAGGATTCTATATAACTATGGAGCAAGGAAAATGGCATTATTTGGAGTTGGTCAAATAGGTTGCAGTCCAAGTGAATTGGCTCAAAACAGCCCAGATGGTAGAACATGTGTAGCTAGAATCAATTCTGCAAATCAGTTATTCAACAATGGATTAAAATCTCTCGTTGATCAATTCAATAACCAATTTCCTGATGCAAGATTCATCTATGTAAATGTTTATGGTATCTTTGGAGACATCATAAACAACCCATCAGCCTATGGTTTCAGAGTAACAAATGCTGGATGTTGTGGCGTAGGAAGGAACAATGGCCAAATTACATGTCTGCCCCTACAACCTGCATGTAGGGATAGAAATGGGTTCTTATTTTGGGATGCATTTCATCCAACAGAAGCTGGAAACACAGTTATTGGTAAAAGAGCTTACAATGCTCAATCTCCATCTGATGCTTACCCTTTTGATATCAATCGCTTAGCACAAATCTAA 855 0.3801 MKRQLGFNGYISSYASARGRDILRGVNYASAAAGIREETGRQLGQRISFRGQVVNYQRTVSQLVNNFGDENNTVNYLSKCIYTIGLGSNDYLNNYFMPQIYSSSRQFTPQQYANVLLQAYAQQLRILYNYGARKMALFGVGQIGCSPSELAQNSPDGRTCVARINSANQLFNNGLKSLVDQFNNQFPDARFIYVNVYGIFGDIINNPSAYGFRVTNAGCCGVGRNNGQITCLPLQPACRDRNGFLFWDAFHPTEAGNTVIGKRAYNAQSPSDAYPFDINRLAQI 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10208 284 Pfam GDSL-like Lipase/Acylhydrolase 18 263 IPR001087 GO:0016788
Vifa1g10208 284 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 3 282 - -
Vifa1g10208 284 Gene3D SGNH hydrolase 1 271 IPR036514 -
Vifa1g10208 284 SUPERFAMILY SGNH hydrolase 82 266 - -
Vifa1g10208 284 CDD SGNH_plant_lipase_like 5 267 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10208 Vifa-Chr1 1697339416 1697344646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10208 10 283 Acyl Lipid Metabolism Gene Families AT4G10950 32.971 3.02e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10208 - - gmx:100791711 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10208 1 1697339416 1697344646 Vifa1g10208 1 1697339416 1697344646 ECH
Vifa1g10208 1 1697339416 1697344646 Vifa1g07865 1 1227429563 1227431657 PCT
Vifa1g07863 1 1227338543 1227340637 Vifa1g10208 1 1697339416 1697344646 PCT