Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10199 ATGGTTGTAGAAGACATCCCAAAATCCATCATCACCGACGATCAAATCACAGCAAACCCTAATCGGGCCATCGAAGACGACAACAATCTCGAAGAAGGAGAGATCCTCGATGAAGACGACTCCTCCGCCACTTCCAAACCCGTCGTCCACCAATCTCACCCCCTCGAGAATTCCTGGACTTTCTGGTTTGATACTCCTACAGCAAAATCCAAACAAGCCTCTTGGGGTAGTTCAATGCGACCCATCTACACTTTTTCCACTGTCGAAGAGTTTTGGAGCATTTACAATAACATTCATCATCCTGGTAAGTTGGTTGTGGGAGCGGATTTCTATTGTTTCAAGCATAAGATTGAACCGAAATGGGAGGATCCCATTTGTGCTAATGGTGGGAAATGGACTGCGAACTATCAGAGGGGAAAATCTGATACCAGTTGGTTGTATACGTTGTTGGCTATGATTGGAGAACAATTTGATCATGGAGATGAAATTTGCGGAGCGGTTGTGAATGTAAGGGGTAGGGCTGAGAAGATTTCTATTTGGACTAAGAATGCTTCAAATGAAGCTGCTCAGGTGAGCATTGGAAAACAGTGGAAGGAGTTTCTTGATTATAATGAGACCATGGGCTTTATATTTCATGATGATGCAAGGAAGCTAGACAGAAATGCTAAAAACAAATATGTTGTTTGA 687 0.4309 MVVEDIPKSIITDDQITANPNRAIEDDNNLEEGEILDEDDSSATSKPVVHQSHPLENSWTFWFDTPTAKSKQASWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLVVGADFYCFKHKIEPKWEDPICANGGKWTANYQRGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10199 228 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 35 215 IPR001040 GO:0003723|GO:0003743|GO:0006413
Vifa1g10199 228 SUPERFAMILY eIF4e-like 25 224 IPR023398 -
Vifa1g10199 228 Gene3D RNA Cap, Translation Initiation Factor Eif4e 45 228 IPR023398 -
Vifa1g10199 228 FunFam Eukaryotic translation initiation factor 4E 44 228 - -
Vifa1g10199 228 ProSitePatterns Eukaryotic initiation factor 4E signature. 109 132 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Vifa1g10199 228 Pfam Eukaryotic initiation factor 4E 54 208 IPR001040 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10199 Vifa-Chr1 1695494848 1695496924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10199 1 228 Eukaryotic Initiation Factors Gene Family AT4G18040 66.109 3.92e-114 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10199 K03259 - gmx:100793288 388.652