Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10195 ATGGCACGGAATACTGAGGTTGATGATGATGGAAGAGATAGCAAAACAAACCAAAAAGTTTCATTCTACAAACTCTTCACTTTTGCAGATAGCCTTGATGTGAGTTTGATGATCATTGGCAATATCTCAGCCATTGCTAATGGAATGTCACAGCCTATCATGACTCTTATCCTTGGCAGAATCATCAACGCCTTTGGTAACACTGATCCACACCATACTCTCAAAGAAGTTTCTAAGGCTTCATTATTGTTTGTTTACCTCGCTATTGGAACTGGAATAGTATCATTCTTACAGGTATCGTGTTGGATGGTGACAGGAGAAAGACAAGCTGCGAGGATTCGTAGTTTGTACTTGAAAACAATATTGAAACAAGATATTGCGTTCTTTGACACGGAAACAAACACTGGAGAGGTAATTGGTAGAATGTCTGGTGACACAATTCTCATTCAAGACGCAATGGGAGAAAAGGTTGGGAAGTTTACTCAACTTGCTACATCATTTTTTGGTGGCTTTGTGGTTGCTTTCATAAAAGGATGGAGACTAGCTTTAGTTTTGCTTGCATGTGTACCTTGTGTTGTTGTTGTTGGTGGAGTCATGTCTATGCTCATGGCTAAAATGTCGACACGTGGACAAGCTGCTTATACAGAAGCAGGAAATGTTGTTGATCAAACCGTCGGAGCCATCAGAACAGTTGCGTCTTTTACCGGGGAGAAAAAAGCAATAGAAAAGTATAATAGTAAGTTAAAAGTTGCTTATACGAGTACGGTTCAACAAGGAACTGCGACAGGATTTGGAATGGGGTTACTTTCATTGATTGTGTTTAGCACCTATGGACTTGCAATGTGGTATGGTTCCATGTTAGTCCTTGAGAAGGGATATACTGGTGGAACTGTTATGAGTGTAATCATAGCTCTTATGACTGGCGGAATGTCATTGGGTCAGACATCTCCATGCATAGATGCATTTACTGCAGGACAAGCAGCCGCGTATAAAATGTTTGAGACGATTAAAAGAAAGCCGAAAATTGATGCATATGACACAAGTGGTGAAATCTTGGAGGACATAAAGGGAGATATCGAACTCAAAGATGTTCACTTCAGATACCCTGCGAGGCCGGACGTGCAGATATTTGCTGGATTTTCACTGTTTGTTCCAAGTGGCACAACTACTGCTTTGGTGGGTCAAAGTGGAAGTGGAAAGTCTACTGTGATCAGTTTATTGGAAAGATTCTATGATCCTGATGCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAACTTGCAACTTAAATGGATAAGGGATCAGATTGGGTTGGTTAGTCAAGAGCCTATATTGTTTACTACTACTATCAGAGAGAACATAGCGTATGGGAAAGAAGGTGCGACTGATGAGGAGATAGCAGCGGCAATAACACTTGCTAATGCGAAAAAGTTCATCGACAAACTGCCTCAGGGCCTTGACACCATGGCGGGACAAAATGGTACTCAACTTTCTGGCGGGCAAAAGCAAAGAATCGCAATTGCAAGAGCAATATTGAAGAACCCGAGAATCCTGCTTCTTGATGAAGCAACGAGTGCGTTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCTTTAGAAAAAATTATGTTTAAAAGGACTACTGTTGTTGTCGCGCATCGTTTAACAACTATCAGAAATGCGGACACAATAGCAGTGGTTCATCAGGGAAAAATCGTGGAGAAAGGAGCTCATGATGAGCTAATCAAGGATGCAGATGGTGCTTATTCTCAGCTTATTCGTCTACAAGAAGGAGAAAAAGAAAGCCAAAATTCTGAAGCAGATAAGTCAAGTCACATGTTAAATAGAGACATGTCTATATCTTCCACCCGAAAGAATTCCCTTGTGATGTCAACAAGCCAAAGATCATCAGGGAGAATCTCCCAAATTGGTGTACAAATCGATGAACCAGATATTGAAGAAGGTCGAGTTGATAATAATAATAACAAGAAGAAACAGAAAAATGTTTCTATAAGACGTTTGGCCTACTTGAACAAACCTGAGATTCCCGTCTTACTGCTCGGATCCATTGCTGCAATAGTGAACGGTGTAGTGTTCCCTGTATTTGGCCTAGTGTTTTCATCGGCCATTAGTATGTTTTACGAACCTCCAGAACAACAGAAGAAAGAAGCTAGGCTCTGGGCACTTCTATACGTCGGTTTGGGTTTGGTTACTCTAGTAGTTTTACCACTTCAGAATTACTTCTTTGGGATTGCTGGTGGAAAGCTTGTAGAAAGAATCCGTTCGCTGACATTTGCAAAGGTTGTGCACCAAGAAATAAGTTGGTTCGATGACCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGACTATCGACCGATGCTTCAACTGTGAAAAGTCTTGTTGGTGACACATTGGCTCTTATTGTGCAAAACATATCAACAATCACAGCTGGTCTGGTTGTAGCATTCACTGCTAATTGGATTCTCGCTTTTATAGTTTTGGCTGTGTCACCAGTGGTTCTCGTGCAAGGAATCATTCAGATGAAGTTTCTCGAAGGATTCAGCGGAGATGCCAAGGTGATGTATGAACAGGCAAGTCAAGTGGCAAATGACGCTGTTAGTAGCATCCGAACTGTTGCATCATTTTGCGCAGAATCAAAGGTTATGGATATGTATCGAAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGTTCGGGGCTTGTAAGTGGCGCAGGATTCGGCTTCTCTTTTGTGGCTCTATATTGCATGACTGCTTTTTGCTTCTACATAGGAGCTGTTCTAGTGCAGCATGATAAAGCCACTTTTCAAGAGGTTTTCAAGGTTTTCTTCAGTTTAACTATAACAGCAGTTGGCATTTCTCAGTCTAGTACTTTGGCACCAGACACTAATAAGGCGAAAGATTCTGCCGCTTCAATATTCAAAATTCTAGACAGTAAACCTACAATTGACTCTAGTAGCAATGCAGGCGAAACATCAGAAACAGTTACAGGTGATATCGAACTTCAACATGTCTGCTTCAATTACCCGACAAGGCCTCACATTCAAATTTTCAAAGATTTATGTCTAAATATCCCCGCCGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGCGGAAAATCAACAGTTATAAGCCTCTTAGAGCGATTTTATAACCTGGACTCAGGACATGTATTACTAGACGGAGTGGACATCAAAACTTTCAGATTAAGCTGGCTGAGGCAACAAATGGGTTTAGTCGGTCAAGAGCCGATTCTCTTCAACGAAAGCATTTGCGCCAACATAGCTTATGGCAAAGAAGGACATGCTACAGAAGACGAGATCATTGTAGCAGCTAAAGCAGCCAATGCACACAGCTTCATAAGTTCTCTTCCAAATGGTTACAATACATCAGTCGGCGAAAGAGGCAGACAGTTATCAGGTGGACAAAAGCAACGCATTGCCATTGCAAGAGCAATGCTGAAAAACCCGAAAATACTTCTGCTTGATGAAGCCACAAGTGCACTTGACGCCGAGTCAGAGCGTATAGTTCAAGAGGCTCTAGACAAAGTGAGTGTGAATAGAACTACTGTGGTGGTTGCTCACCGTCTTACAACGATTCGAGGAGCGGATACTATAGCAGTGATTAAAAATGGAGTGGTTGCTGAAAAGGGAAGACATGATGTGTTGATGAAGATCCCTGATGGGGTTTATGCTTCATTAGTAACTCTTCATTCAAGTGCATCATAA 3756 0.4172 MARNTEVDDDGRDSKTNQKVSFYKLFTFADSLDVSLMIIGNISAIANGMSQPIMTLILGRIINAFGNTDPHHTLKEVSKASLLFVYLAIGTGIVSFLQVSCWMVTGERQAARIRSLYLKTILKQDIAFFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFTQLATSFFGGFVVAFIKGWRLALVLLACVPCVVVVGGVMSMLMAKMSTRGQAAYTEAGNVVDQTVGAIRTVASFTGEKKAIEKYNSKLKVAYTSTVQQGTATGFGMGLLSLIVFSTYGLAMWYGSMLVLEKGYTGGTVMSVIIALMTGGMSLGQTSPCIDAFTAGQAAAYKMFETIKRKPKIDAYDTSGEILEDIKGDIELKDVHFRYPARPDVQIFAGFSLFVPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNLQLKWIRDQIGLVSQEPILFTTTIRENIAYGKEGATDEEIAAAITLANAKKFIDKLPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKIMFKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGAHDELIKDADGAYSQLIRLQEGEKESQNSEADKSSHMLNRDMSISSTRKNSLVMSTSQRSSGRISQIGVQIDEPDIEEGRVDNNNNKKKQKNVSIRRLAYLNKPEIPVLLLGSIAAIVNGVVFPVFGLVFSSAISMFYEPPEQQKKEARLWALLYVGLGLVTLVVLPLQNYFFGIAGGKLVERIRSLTFAKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNISTITAGLVVAFTANWILAFIVLAVSPVVLVQGIIQMKFLEGFSGDAKVMYEQASQVANDAVSSIRTVASFCAESKVMDMYRKKCSGPEKQGVRSGLVSGAGFGFSFVALYCMTAFCFYIGAVLVQHDKATFQEVFKVFFSLTITAVGISQSSTLAPDTNKAKDSAASIFKILDSKPTIDSSSNAGETSETVTGDIELQHVCFNYPTRPHIQIFKDLCLNIPAGKTVALVGESGSGKSTVISLLERFYNLDSGHVLLDGVDIKTFRLSWLRQQMGLVGQEPILFNESICANIAYGKEGHATEDEIIVAAKAANAHSFISSLPNGYNTSVGERGRQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERIVQEALDKVSVNRTTVVVAHRLTTIRGADTIAVIKNGVVAEKGRHDVLMKIPDGVYASLVTLHSSAS 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10195 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Vifa1g10195 1251 Pfam ABC transporter transmembrane region 37 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g10195 1251 Pfam ABC transporter transmembrane region 687 959 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g10195 1251 Gene3D - 357 610 IPR027417 -
Vifa1g10195 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1245 IPR003439 GO:0005524
Vifa1g10195 1251 MobiDBLite consensus disorder prediction 600 614 - -
Vifa1g10195 1251 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Vifa1g10195 1251 Pfam ABC transporter 380 526 IPR003439 GO:0005524
Vifa1g10195 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 597 IPR027417 -
Vifa1g10195 1251 FunFam ABC transporter B family member 1 998 1248 - -
Vifa1g10195 1251 FunFam ABC transporter B family member 1 349 598 - -
Vifa1g10195 1251 SMART AAA_5 386 572 IPR003593 GO:0016887
Vifa1g10195 1251 SMART AAA_5 1035 1222 IPR003593 GO:0016887
Vifa1g10195 1251 CDD ABC_MTABC3_MDL1_MDL2 359 597 - -
Vifa1g10195 1251 Gene3D ABC transporter type 1, transmembrane domain 83 982 IPR036640 GO:0005524|GO:0016020
Vifa1g10195 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 332 - -
Vifa1g10195 1251 FunFam ABC transporter B family member 9 24 355 - -
Vifa1g10195 1251 FunFam ABC transporter B family member 1 666 974 - -
Vifa1g10195 1251 Pfam ABC transporter 1027 1176 IPR003439 GO:0005524
Vifa1g10195 1251 MobiDBLite consensus disorder prediction 597 619 - -
Vifa1g10195 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 973 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g10195 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1002 1245 IPR027417 -
Vifa1g10195 1251 Gene3D - 998 1250 IPR027417 -
Vifa1g10195 1251 PANTHER ABC TRANSPORTER B FAMILY 9 598 IPR039421 -
Vifa1g10195 1251 SUPERFAMILY ABC transporter transmembrane region 673 989 IPR036640 GO:0005524|GO:0016020
Vifa1g10195 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 991 - -
Vifa1g10195 1251 SUPERFAMILY ABC transporter transmembrane region 25 343 IPR036640 GO:0005524|GO:0016020
Vifa1g10195 1251 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524|GO:0016887
Vifa1g10195 1251 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524|GO:0016887
Vifa1g10195 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10195 Vifa-Chr1 1695055625 1695060275 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10195 20 1247 Calmodulin-binding Proteins AT2G36910 45.528 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10195 K05658 - gmx:100801771 1912.89