Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g10195 | ATGGCACGGAATACTGAGGTTGATGATGATGGAAGAGATAGCAAAACAAACCAAAAAGTTTCATTCTACAAACTCTTCACTTTTGCAGATAGCCTTGATGTGAGTTTGATGATCATTGGCAATATCTCAGCCATTGCTAATGGAATGTCACAGCCTATCATGACTCTTATCCTTGGCAGAATCATCAACGCCTTTGGTAACACTGATCCACACCATACTCTCAAAGAAGTTTCTAAGGCTTCATTATTGTTTGTTTACCTCGCTATTGGAACTGGAATAGTATCATTCTTACAGGTATCGTGTTGGATGGTGACAGGAGAAAGACAAGCTGCGAGGATTCGTAGTTTGTACTTGAAAACAATATTGAAACAAGATATTGCGTTCTTTGACACGGAAACAAACACTGGAGAGGTAATTGGTAGAATGTCTGGTGACACAATTCTCATTCAAGACGCAATGGGAGAAAAGGTTGGGAAGTTTACTCAACTTGCTACATCATTTTTTGGTGGCTTTGTGGTTGCTTTCATAAAAGGATGGAGACTAGCTTTAGTTTTGCTTGCATGTGTACCTTGTGTTGTTGTTGTTGGTGGAGTCATGTCTATGCTCATGGCTAAAATGTCGACACGTGGACAAGCTGCTTATACAGAAGCAGGAAATGTTGTTGATCAAACCGTCGGAGCCATCAGAACAGTTGCGTCTTTTACCGGGGAGAAAAAAGCAATAGAAAAGTATAATAGTAAGTTAAAAGTTGCTTATACGAGTACGGTTCAACAAGGAACTGCGACAGGATTTGGAATGGGGTTACTTTCATTGATTGTGTTTAGCACCTATGGACTTGCAATGTGGTATGGTTCCATGTTAGTCCTTGAGAAGGGATATACTGGTGGAACTGTTATGAGTGTAATCATAGCTCTTATGACTGGCGGAATGTCATTGGGTCAGACATCTCCATGCATAGATGCATTTACTGCAGGACAAGCAGCCGCGTATAAAATGTTTGAGACGATTAAAAGAAAGCCGAAAATTGATGCATATGACACAAGTGGTGAAATCTTGGAGGACATAAAGGGAGATATCGAACTCAAAGATGTTCACTTCAGATACCCTGCGAGGCCGGACGTGCAGATATTTGCTGGATTTTCACTGTTTGTTCCAAGTGGCACAACTACTGCTTTGGTGGGTCAAAGTGGAAGTGGAAAGTCTACTGTGATCAGTTTATTGGAAAGATTCTATGATCCTGATGCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAACTTGCAACTTAAATGGATAAGGGATCAGATTGGGTTGGTTAGTCAAGAGCCTATATTGTTTACTACTACTATCAGAGAGAACATAGCGTATGGGAAAGAAGGTGCGACTGATGAGGAGATAGCAGCGGCAATAACACTTGCTAATGCGAAAAAGTTCATCGACAAACTGCCTCAGGGCCTTGACACCATGGCGGGACAAAATGGTACTCAACTTTCTGGCGGGCAAAAGCAAAGAATCGCAATTGCAAGAGCAATATTGAAGAACCCGAGAATCCTGCTTCTTGATGAAGCAACGAGTGCGTTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCTTTAGAAAAAATTATGTTTAAAAGGACTACTGTTGTTGTCGCGCATCGTTTAACAACTATCAGAAATGCGGACACAATAGCAGTGGTTCATCAGGGAAAAATCGTGGAGAAAGGAGCTCATGATGAGCTAATCAAGGATGCAGATGGTGCTTATTCTCAGCTTATTCGTCTACAAGAAGGAGAAAAAGAAAGCCAAAATTCTGAAGCAGATAAGTCAAGTCACATGTTAAATAGAGACATGTCTATATCTTCCACCCGAAAGAATTCCCTTGTGATGTCAACAAGCCAAAGATCATCAGGGAGAATCTCCCAAATTGGTGTACAAATCGATGAACCAGATATTGAAGAAGGTCGAGTTGATAATAATAATAACAAGAAGAAACAGAAAAATGTTTCTATAAGACGTTTGGCCTACTTGAACAAACCTGAGATTCCCGTCTTACTGCTCGGATCCATTGCTGCAATAGTGAACGGTGTAGTGTTCCCTGTATTTGGCCTAGTGTTTTCATCGGCCATTAGTATGTTTTACGAACCTCCAGAACAACAGAAGAAAGAAGCTAGGCTCTGGGCACTTCTATACGTCGGTTTGGGTTTGGTTACTCTAGTAGTTTTACCACTTCAGAATTACTTCTTTGGGATTGCTGGTGGAAAGCTTGTAGAAAGAATCCGTTCGCTGACATTTGCAAAGGTTGTGCACCAAGAAATAAGTTGGTTCGATGACCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGACTATCGACCGATGCTTCAACTGTGAAAAGTCTTGTTGGTGACACATTGGCTCTTATTGTGCAAAACATATCAACAATCACAGCTGGTCTGGTTGTAGCATTCACTGCTAATTGGATTCTCGCTTTTATAGTTTTGGCTGTGTCACCAGTGGTTCTCGTGCAAGGAATCATTCAGATGAAGTTTCTCGAAGGATTCAGCGGAGATGCCAAGGTGATGTATGAACAGGCAAGTCAAGTGGCAAATGACGCTGTTAGTAGCATCCGAACTGTTGCATCATTTTGCGCAGAATCAAAGGTTATGGATATGTATCGAAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGTTCGGGGCTTGTAAGTGGCGCAGGATTCGGCTTCTCTTTTGTGGCTCTATATTGCATGACTGCTTTTTGCTTCTACATAGGAGCTGTTCTAGTGCAGCATGATAAAGCCACTTTTCAAGAGGTTTTCAAGGTTTTCTTCAGTTTAACTATAACAGCAGTTGGCATTTCTCAGTCTAGTACTTTGGCACCAGACACTAATAAGGCGAAAGATTCTGCCGCTTCAATATTCAAAATTCTAGACAGTAAACCTACAATTGACTCTAGTAGCAATGCAGGCGAAACATCAGAAACAGTTACAGGTGATATCGAACTTCAACATGTCTGCTTCAATTACCCGACAAGGCCTCACATTCAAATTTTCAAAGATTTATGTCTAAATATCCCCGCCGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGCGGAAAATCAACAGTTATAAGCCTCTTAGAGCGATTTTATAACCTGGACTCAGGACATGTATTACTAGACGGAGTGGACATCAAAACTTTCAGATTAAGCTGGCTGAGGCAACAAATGGGTTTAGTCGGTCAAGAGCCGATTCTCTTCAACGAAAGCATTTGCGCCAACATAGCTTATGGCAAAGAAGGACATGCTACAGAAGACGAGATCATTGTAGCAGCTAAAGCAGCCAATGCACACAGCTTCATAAGTTCTCTTCCAAATGGTTACAATACATCAGTCGGCGAAAGAGGCAGACAGTTATCAGGTGGACAAAAGCAACGCATTGCCATTGCAAGAGCAATGCTGAAAAACCCGAAAATACTTCTGCTTGATGAAGCCACAAGTGCACTTGACGCCGAGTCAGAGCGTATAGTTCAAGAGGCTCTAGACAAAGTGAGTGTGAATAGAACTACTGTGGTGGTTGCTCACCGTCTTACAACGATTCGAGGAGCGGATACTATAGCAGTGATTAAAAATGGAGTGGTTGCTGAAAAGGGAAGACATGATGTGTTGATGAAGATCCCTGATGGGGTTTATGCTTCATTAGTAACTCTTCATTCAAGTGCATCATAA | 3756 | 0.4172 | MARNTEVDDDGRDSKTNQKVSFYKLFTFADSLDVSLMIIGNISAIANGMSQPIMTLILGRIINAFGNTDPHHTLKEVSKASLLFVYLAIGTGIVSFLQVSCWMVTGERQAARIRSLYLKTILKQDIAFFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFTQLATSFFGGFVVAFIKGWRLALVLLACVPCVVVVGGVMSMLMAKMSTRGQAAYTEAGNVVDQTVGAIRTVASFTGEKKAIEKYNSKLKVAYTSTVQQGTATGFGMGLLSLIVFSTYGLAMWYGSMLVLEKGYTGGTVMSVIIALMTGGMSLGQTSPCIDAFTAGQAAAYKMFETIKRKPKIDAYDTSGEILEDIKGDIELKDVHFRYPARPDVQIFAGFSLFVPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNLQLKWIRDQIGLVSQEPILFTTTIRENIAYGKEGATDEEIAAAITLANAKKFIDKLPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKIMFKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGAHDELIKDADGAYSQLIRLQEGEKESQNSEADKSSHMLNRDMSISSTRKNSLVMSTSQRSSGRISQIGVQIDEPDIEEGRVDNNNNKKKQKNVSIRRLAYLNKPEIPVLLLGSIAAIVNGVVFPVFGLVFSSAISMFYEPPEQQKKEARLWALLYVGLGLVTLVVLPLQNYFFGIAGGKLVERIRSLTFAKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNISTITAGLVVAFTANWILAFIVLAVSPVVLVQGIIQMKFLEGFSGDAKVMYEQASQVANDAVSSIRTVASFCAESKVMDMYRKKCSGPEKQGVRSGLVSGAGFGFSFVALYCMTAFCFYIGAVLVQHDKATFQEVFKVFFSLTITAVGISQSSTLAPDTNKAKDSAASIFKILDSKPTIDSSSNAGETSETVTGDIELQHVCFNYPTRPHIQIFKDLCLNIPAGKTVALVGESGSGKSTVISLLERFYNLDSGHVLLDGVDIKTFRLSWLRQQMGLVGQEPILFNESICANIAYGKEGHATEDEIIVAAKAANAHSFISSLPNGYNTSVGERGRQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERIVQEALDKVSVNRTTVVVAHRLTTIRGADTIAVIKNGVVAEKGRHDVLMKIPDGVYASLVTLHSSAS | 1251 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g10195 | 1251 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 359 | 595 | IPR003439 | GO:0005524 | |
Vifa1g10195 | 1251 | Pfam | ABC transporter transmembrane region | 37 | 309 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vifa1g10195 | 1251 | Pfam | ABC transporter transmembrane region | 687 | 959 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vifa1g10195 | 1251 | Gene3D | - | 357 | 610 | IPR027417 | - | |
Vifa1g10195 | 1251 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1008 | 1245 | IPR003439 | GO:0005524 | |
Vifa1g10195 | 1251 | MobiDBLite | consensus disorder prediction | 600 | 614 | - | - | |
Vifa1g10195 | 1251 | CDD | ABC_MTABC3_MDL1_MDL2 | 1008 | 1246 | - | - | |
Vifa1g10195 | 1251 | Pfam | ABC transporter | 380 | 526 | IPR003439 | GO:0005524 | |
Vifa1g10195 | 1251 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 351 | 597 | IPR027417 | - | |
Vifa1g10195 | 1251 | FunFam | ABC transporter B family member 1 | 998 | 1248 | - | - | |
Vifa1g10195 | 1251 | FunFam | ABC transporter B family member 1 | 349 | 598 | - | - | |
Vifa1g10195 | 1251 | SMART | AAA_5 | 386 | 572 | IPR003593 | GO:0016887 | |
Vifa1g10195 | 1251 | SMART | AAA_5 | 1035 | 1222 | IPR003593 | GO:0016887 | |
Vifa1g10195 | 1251 | CDD | ABC_MTABC3_MDL1_MDL2 | 359 | 597 | - | - | |
Vifa1g10195 | 1251 | Gene3D | ABC transporter type 1, transmembrane domain | 83 | 982 | IPR036640 | GO:0005524|GO:0016020 | |
Vifa1g10195 | 1251 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 37 | 332 | - | - | |
Vifa1g10195 | 1251 | FunFam | ABC transporter B family member 9 | 24 | 355 | - | - | |
Vifa1g10195 | 1251 | FunFam | ABC transporter B family member 1 | 666 | 974 | - | - | |
Vifa1g10195 | 1251 | Pfam | ABC transporter | 1027 | 1176 | IPR003439 | GO:0005524 | |
Vifa1g10195 | 1251 | MobiDBLite | consensus disorder prediction | 597 | 619 | - | - | |
Vifa1g10195 | 1251 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 687 | 973 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vifa1g10195 | 1251 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1002 | 1245 | IPR027417 | - | |
Vifa1g10195 | 1251 | Gene3D | - | 998 | 1250 | IPR027417 | - | |
Vifa1g10195 | 1251 | PANTHER | ABC TRANSPORTER B FAMILY | 9 | 598 | IPR039421 | - | |
Vifa1g10195 | 1251 | SUPERFAMILY | ABC transporter transmembrane region | 673 | 989 | IPR036640 | GO:0005524|GO:0016020 | |
Vifa1g10195 | 1251 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 676 | 991 | - | - | |
Vifa1g10195 | 1251 | SUPERFAMILY | ABC transporter transmembrane region | 25 | 343 | IPR036640 | GO:0005524|GO:0016020 | |
Vifa1g10195 | 1251 | ProSitePatterns | ABC transporters family signature. | 1148 | 1162 | IPR017871 | GO:0005524|GO:0016887 | |
Vifa1g10195 | 1251 | ProSitePatterns | ABC transporters family signature. | 498 | 512 | IPR017871 | GO:0005524|GO:0016887 | |
Vifa1g10195 | 1251 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 38 | 324 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g10195 | Vifa-Chr1 | 1695055625 | 1695060275 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g10195 | 20 | 1247 | Calmodulin-binding Proteins | AT2G36910 | 45.528 | 0.0 | 1060 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g10195 | K05658 | - | gmx:100801771 | 1912.89 |