Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10194 ATGTACCGTTATCTCCGATACCACAAGCCTGATCTTGAGATTGAGAAGGAAAGAATTTCAAAAGTTGGTGGTTTTATTCATGCAGGAAGAGTAAATGGCAGTTTAAACCTTACAAGAGCTATAGGTGACATGGAATTTAAACAGAACAAATTTCTTTATGCTGAACAAGTTGTAACTGCCAATCCAGATATTAACACTGTTGAGCTTTCTGATGAAGATGAATTTATAGTTCTAGCTTGTGATGGAATATGGTACTCTTCTTATGCTTTATATGTCCATCTAATTATGAACATTGTGATCTATCTGAGAGATCAATAA 318 0.3428 MYRYLRYHKPDLEIEKERISKVGGFIHAGRVNGSLNLTRAIGDMEFKQNKFLYAEQVVTANPDINTVELSDEDEFIVLACDGIWYSSYALYVHLIMNIVIYLRDQ 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10194 105 Gene3D - 2 96 IPR036457 -
Vifa1g10194 105 SUPERFAMILY PP2C-like 7 85 IPR036457 -
Vifa1g10194 105 CDD PP2Cc 8 84 IPR001932 -
Vifa1g10194 105 ProSiteProfiles PPM-type phosphatase domain profile. 1 105 IPR001932 -
Vifa1g10194 105 PANTHER PROTEIN PHOSPHATASE 2C 7 85 IPR015655 GO:0004722|GO:0006470
Vifa1g10194 105 Pfam Protein phosphatase 2C 8 84 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10194 Vifa-Chr1 1695038534 1695043438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10194 2 99 PP2C-type Phosphatase Gene Family AT4G31860 68.932 9.35e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10194 K17499 - gmx:100787778 143.28