Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10193 ATGACACGCGCCACTGAGGTACATGACAACTCTTCACCATCATCATCAACACAAAACCATGAAACCAAAACGAACCAGAAAGTTCCATTCTATAAGCTCTTCAATTTCGCCGATCGTCTCGATGTAACGTTGATGATCATTGGCACTATCGCTGCTGTGGCTAATGGCTTGTCTCAGCCTCTCATGACACTTATCTTTGGGAAACTCATCAATGCTTTTGGTGGCTCTGATTCATCAGCCATCGTTAAACAAGTTTCTAAGGTATCACTGTTATTTGTTTACTTGGCTGCTGGAGCTGGAATAGCGTCGTTTCTACAGGTATCTTGTTGGATGGTGACAGGAGAAAGACAAGCTGCGAGGATTCGTAGTTTGTACTTGAAAACAATATTGAAACAGGATATTGCGTTCTTTGACACTGAAACAAACACAGGAGAGGTGATTGGTAGAATGTCTGGTGACACAATTCTCATTCAAGATGCAATGGGAGAAAAGGTTGGGAAGTTTGTTCAGCTTGCTTCGAATTTTTTTGGTGGCTTTGTGATCGCGTTTATAAAAGGATGGCGTCTAGCTGTAGTTTTACTTGCATGTATGCCTTGTGTTATTTTTGCTGGTGGTTTCATGTCCATGCTGATGGCTAAAATGTCAAGCCGCGGACAAGTTGCTTATGCTGAAGCAGGAAATGTGGTTGATCAAACAGTTGGAGCCATCAGAACAGTTGCATCTTTTACTGGTGAGAAAAAAGCCATAGAGAGGTATAATAGCAAGATAAAAGTTGCTTATACTACAATGGTTCACCAAGGGATAGTCTCAGGGTTAGGAATGGGAACGCTTCTCTTAATCGTTTTCTGCACTTATGGACTTGCCATGTGGTATGGTTCCAAACTAGTTATTGAGAAAGGATATAACGGTGGAAGTGTCATTACTGTGATCATAGCTCTTATGACTGGTGGAATGGCACTAGGTCAGGCATCCCCGTGCATAAACGCATTTGCTGCAGGACAAGCAGCAGCATATAAAATGTTTGAGACAATTAAAAGAAAGCCCAAAATTGATGCATATGACACAAGTGGTGTTGTCTTGGAAAACATAAAGGGAGATATTGAACTCAAAGATGTTTATTTTAGATACCCTGCAAGGCCAGATGTGCAGATATTTGCTGGATTCTCACTGTTTGTTCCAAGTGGCACAACTACTGCTTTGGTGGGTCAAAGTGGAAGTGGAAAGTCTACTGTAATCAGTTTATTGGAAAGATTCTATGATCCTGATGCTGGAGAAGTGCTTATAGATGGTGTGAATTTGAAGAACTTGCAACTTAGATGGATAAGGGAACAGATTGGGTTGGTTAGTCAAGAGCCTATCTTGTTTACTACTACTATCAGAGAGAACATAGCATACGGGAAAGAAGGTGCAACTGATGAGGAGATAACAGCAGCAATAACACTTGCTAATGCCAAAAATTTCATTGACAAACTGCCTCAGGGCCTTGACACCATGGCGGGACAAAATGGTACTCAACTTTCTGGGGGTCAAAAGCAAAGAATTGCAATTGCGAGAGCAATATTGAAGAACCCGAGGATCCTGCTTCTTGATGAAGCGACAAGTGCATTGGATGCTGAGTCAGAACGTATTGTTCAAGAAGCATTAGAAAAAATTATAGTAAAAAGGACTACTGTTGTTGTTGCGCATCGTTTGACAACTATCAGAAATGCTGACACAATAGCAGTGGTTCATCAGGGAAAAATCGTAGAGAGAGGAACTCATAGCGAGTTAACCATGGATGCTTACGGTGCTTATTCTCAACTTATTCGTCTACAAGAAGGAGAAAAAGAAGCTGAAGGTAGCAGAACATCTGAAGCAGATAAGTCAGGTGACTGTTTAAATATAGAAAGTCACATGGCTAGATCTTCTACCCAAAGACGCTCTTTTATGAGATCAATAAGCCAAAAATCATCAGCAAGTTTTGGGCGTTCTCAGTCACAAAGAGGCTTGTCTGGAGAAATAAAAGGAGATATTGAACAAGGTCAACTTGATAATAAGGAAAAGCCCAAAAGGGTACCTCTAACGCGTTTGGCTAAGTTGAACAAGCCTGAGGTTCCTGTCATACTGCTTGGAAGCATTGCTGCAATAATACATGGTGTCGTGTTCCCTATATTTGGCCTGTTGTTTTCATCAGTCATTAGTATGTTTTTTAAACCTCCAGACCAGCAGAAGAAAGAGTCCAGGCTATGGTCACTTCTATATGTAGGTTTGGGTTTCGTTACTCTAGTGGTTTTACCACTGCAGAATTACTTCTTTGGGATTGCTGGTGGAAAACTTATTGAAAGAGTTCGTTCGTTGACATTTGAAAAGATTGTGCACCAAGAAATTAGATGGTTTGACAATCCTGCAAATTCAAGTGGTGCAGTAGGTGCAAGGCTATCTACCGATGCTTCAACTGTGAAAAGTCTTGTTGGTGACACATTGGCCCTCGTTGTGCAAAATATATCAACAATCACAGCTGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTTGCTTTTATAGTTTTGGCTGTGTCACCTATGGTTCTTATGCAAGGATTCGTTCAGATGAAGTTTCTTAAAGGATTCAGTGCTGATGCCAAGGTGATGTATGAAGAGGCGAGTCAAGTGGCAAATGATGCTGTTAGTAGCATAAGAACTGTTGCATCATTTTGTGCAGAATCAAAGGTGATGGACATGTACAAGAAAAAGTGTTTAGGGCCAGAGAAACAAGGTGCTCGCTTGGGGCTTGTTAGTGGAGCAGGATTTGGTTTCTCTTTTTTAGCTCTATATTGCACAAATGCTTTCACTTTCTACATAGGATCTATTTTAGTGCAACACGGGAAAGCAACGTTTCAAGAGGTTTTCAGGGTTTTCTTTTGTTTAACAATGACAGCAATCTCCGTTTCACAGTCTAGTGCATTGGCACCAGATGCTAACAAGGCGAAAGATTCCACAGCTTCAATATTTGAAATTCTTGACAGCAAACCTGATATTGATTCCAGCAGCAAGGAGGGTGTAATGCAAGAAACGGTAGTTGGTAATATTGAACTTCAACATGTCAGCTTTAATTACCCAACAAGGCCACACATTCAAATTTTCAGAGATTTAAGCCTAAGCATCCCGTCTGCAAAGACTGTTGCGTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTTATAAGCCTTTTAGAGAGATTCTATGACCCTGATTCTGGACATGTGTACCTAGATGGAGTGGATATCACAAAGTTCAGATTAAGCTGGTTGAGGCAACAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAACGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAGGGAGGTGCTACCGAGGATGAGATAATTGCAGCAGCTAATGCAGCCAATGCACACAGCTTCATAAGTTCTCTTCCAAATGGTTATGAAACCTCTGTTGGGGAAAGAGGCACACAACTATCAGGCGGACAAAAGCAACGTATTGCTATTGCAAGAGCCATGCTGAAAAACCCGAAAATACTTTTGCTTGATGAGGCGACAAGTGCACTTGATGCCGAGTCAGAGCGTATAGTTCAAGAGGCTCTAGACAAAGTGAGTGTGAACAGAACTACTGTGGTCGTGGCTCACCGTCTTACAACAATTCGAGGGGCTGATACTATAGCAGTAATTAAAAATGGGGTGGTTGCTGAAGAGGGAAGACATGATGTGTTGATGAAGATTACTGATGGTGTTTATGCTTCTTTAGTAGCTCTTCATTCAAGTGCATCATAA 3801 0.4136 MTRATEVHDNSSPSSSTQNHETKTNQKVPFYKLFNFADRLDVTLMIIGTIAAVANGLSQPLMTLIFGKLINAFGGSDSSAIVKQVSKVSLLFVYLAAGAGIASFLQVSCWMVTGERQAARIRSLYLKTILKQDIAFFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFVQLASNFFGGFVIAFIKGWRLAVVLLACMPCVIFAGGFMSMLMAKMSSRGQVAYAEAGNVVDQTVGAIRTVASFTGEKKAIERYNSKIKVAYTTMVHQGIVSGLGMGTLLLIVFCTYGLAMWYGSKLVIEKGYNGGSVITVIIALMTGGMALGQASPCINAFAAGQAAAYKMFETIKRKPKIDAYDTSGVVLENIKGDIELKDVYFRYPARPDVQIFAGFSLFVPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNLQLRWIREQIGLVSQEPILFTTTIRENIAYGKEGATDEEITAAITLANAKNFIDKLPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKIIVKRTTVVVAHRLTTIRNADTIAVVHQGKIVERGTHSELTMDAYGAYSQLIRLQEGEKEAEGSRTSEADKSGDCLNIESHMARSSTQRRSFMRSISQKSSASFGRSQSQRGLSGEIKGDIEQGQLDNKEKPKRVPLTRLAKLNKPEVPVILLGSIAAIIHGVVFPIFGLLFSSVISMFFKPPDQQKKESRLWSLLYVGLGFVTLVVLPLQNYFFGIAGGKLIERVRSLTFEKIVHQEIRWFDNPANSSGAVGARLSTDASTVKSLVGDTLALVVQNISTITAGLVIAFTANWILAFIVLAVSPMVLMQGFVQMKFLKGFSADAKVMYEEASQVANDAVSSIRTVASFCAESKVMDMYKKKCLGPEKQGARLGLVSGAGFGFSFLALYCTNAFTFYIGSILVQHGKATFQEVFRVFFCLTMTAISVSQSSALAPDANKAKDSTASIFEILDSKPDIDSSSKEGVMQETVVGNIELQHVSFNYPTRPHIQIFRDLSLSIPSAKTVALVGESGSGKSTVISLLERFYDPDSGHVYLDGVDITKFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEDEIIAAANAANAHSFISSLPNGYETSVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERIVQEALDKVSVNRTTVVVAHRLTTIRGADTIAVIKNGVVAEEGRHDVLMKITDGVYASLVALHSSAS 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10193 1266 FunFam ABC transporter B family member 1 357 606 - -
Vifa1g10193 1266 Pfam ABC transporter 1042 1191 IPR003439 GO:0005524
Vifa1g10193 1266 CDD ABC_6TM_Pgp_ABCB1_D1_like 45 328 - -
Vifa1g10193 1266 Gene3D ABC transporter type 1, transmembrane domain 100 997 IPR036640 GO:0005524|GO:0016020
Vifa1g10193 1266 FunFam ABC transporter B family member 1 1013 1263 - -
Vifa1g10193 1266 MobiDBLite consensus disorder prediction 648 677 - -
Vifa1g10193 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 702 988 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g10193 1266 ProSitePatterns ABC transporters family signature. 1163 1177 IPR017871 GO:0005524|GO:0016887
Vifa1g10193 1266 CDD ABC_MTABC3_MDL1_MDL2 367 605 - -
Vifa1g10193 1266 Pfam ABC transporter 388 534 IPR003439 GO:0005524
Vifa1g10193 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 603 IPR003439 GO:0005524
Vifa1g10193 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 605 IPR027417 -
Vifa1g10193 1266 PANTHER ABC TRANSPORTER B FAMILY 10 613 IPR039421 -
Vifa1g10193 1266 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g10193 1266 CDD ABC_6TM_Pgp_ABCB1_D2_like 691 1006 - -
Vifa1g10193 1266 Gene3D - 1013 1265 IPR027417 -
Vifa1g10193 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1023 1260 IPR003439 GO:0005524
Vifa1g10193 1266 MobiDBLite consensus disorder prediction 648 664 - -
Vifa1g10193 1266 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524|GO:0016887
Vifa1g10193 1266 FunFam ABC transporter B family member 1 681 989 - -
Vifa1g10193 1266 CDD ABC_MTABC3_MDL1_MDL2 1023 1259 - -
Vifa1g10193 1266 Gene3D - 365 618 IPR027417 -
Vifa1g10193 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 46 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g10193 1266 SUPERFAMILY ABC transporter transmembrane region 681 1005 IPR036640 GO:0005524|GO:0016020
Vifa1g10193 1266 FunFam ABC transporter B family member 9 32 362 - -
Vifa1g10193 1266 Pfam ABC transporter transmembrane region 702 973 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g10193 1266 Pfam ABC transporter transmembrane region 45 317 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g10193 1266 SUPERFAMILY ABC transporter transmembrane region 32 348 IPR036640 GO:0005524|GO:0016020
Vifa1g10193 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1014 1260 IPR027417 -
Vifa1g10193 1266 SMART AAA_5 394 580 IPR003593 GO:0016887
Vifa1g10193 1266 SMART AAA_5 1050 1237 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10193 Vifa-Chr1 1694880664 1694885767 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10193 28 1262 Calmodulin-binding Proteins AT2G36910 45.404 0.0 1066