Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10191 ATGGCAAATTTTAGTTCAAGTTATGTGAAGGATCTTCTTTTTGTTGTTCTTTTATTATCACATATTGCATTCCAAGTTGCAACATGTGGCTCCCTGGTCAAGTTTCTTCCTGGATTCAATGGACCTCTTCCTTTTCTGCTTGAAACTGGGTATGTGGGAGTTGGTGAAAAAGAGGATGTGCAAGTGTTTTATTATTTCTTTGAATCAGAATATAATCCAAAGGAAGATCCTCTCATGCTTTGGCTCAATGGTGGACCTGGTTGCTCTGCTTTGTCTGCCATTCTCTTTGAAATTGGCCCACTTCAATTTAAAAAGGAGGAATACAATGGGAGCCTGCCTAATCTCATCTTGAGGCCACACTCATGGACAAAGGTGAGTAGCATTATATTTGTAGATTTGCCTGTTTCCACAGGCTTCACTTATGCCACAACAGATTCAGGATCTCAAAGGAGCGACTCGATACAAGTTCGTCAAGCTCACCAATTTTTTAGAAAGTGGCTGAATGATCATCCAAAATTTCAATCAAACGAAGTTTACATTGGTGGTGATTCATACTCGGGCGCTACTGTTCCGATAGTTGCTCAAGAAATTTCACAAGAAAATGAAAAAGGGGTTCAACCGTTGATAAATCTCCAGGGATACATTTTGGGGAATGCTGTAGCAACTAGAAAGGAACGAAACTATAAAATCCCTTTTGCTCATGGAATGGGACTCATATCTGATGAATTATACGAGTCACTGCAAATAAATTGTAATGGAGATTATATAAATGCAGAGACCAAAAATGCTTTATGTTCCAAAGATCTCAGTTCATTCGACAAGGCTATATCAGAAATTAATCAAGGCCATATTTTAGAACCGTCATGTGTATGGCTTTATACTGAGAATTCTCCAAGGAGATCTCTAATTGAGAAATATCACTCCAAAGTTTCGCCCTTAAAATGCCGAAATTATCCATATTTACTTTCCATGTATTGGGCCAATGATGATAATGTTCGCAAAACACTGAACATACATAAGGGAAGTATTGGGAAATGGCATCGTTGTTCCTATGATATACCGTATAACATGGATATTCCTAACATCTATGATTATCATGTAAATCTCAGTAGAAAAGGATATCGTTCATTAATTTACAGTGGTGATCATGACATGGTGATTCCATTTTTGGAGACAAAAGCATGGATAAAATCTTTAAATTATTCTATTGTTGATGATTGGAGACCGTGGCATACAAACGAGCAAGTTGCAGGATACACAAGGACTTACTCGAATCAGATGACATTTGCAACTGTGAAGGGTGGAGGACACACAGCACCCGAGTACCTTCCTGAAGAATGTTTCACCATGTTCAGTAGGTGGATATCTAAGAGGGCGTTGTAG 1383 0.3839 MANFSSSYVKDLLFVVLLLSHIAFQVATCGSLVKFLPGFNGPLPFLLETGYVGVGEKEDVQVFYYFFESEYNPKEDPLMLWLNGGPGCSALSAILFEIGPLQFKKEEYNGSLPNLILRPHSWTKVSSIIFVDLPVSTGFTYATTDSGSQRSDSIQVRQAHQFFRKWLNDHPKFQSNEVYIGGDSYSGATVPIVAQEISQENEKGVQPLINLQGYILGNAVATRKERNYKIPFAHGMGLISDELYESLQINCNGDYINAETKNALCSKDLSSFDKAISEINQGHILEPSCVWLYTENSPRRSLIEKYHSKVSPLKCRNYPYLLSMYWANDDNVRKTLNIHKGSIGKWHRCSYDIPYNMDIPNIYDYHVNLSRKGYRSLIYSGDHDMVIPFLETKAWIKSLNYSIVDDWRPWHTNEQVAGYTRTYSNQMTFATVKGGGHTAPEYLPEECFTMFSRWISKRAL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10191 460 Pfam Serine carboxypeptidase 37 456 IPR001563 GO:0004185|GO:0006508
Vifa1g10191 460 Gene3D alpha/beta hydrolase 29 296 IPR029058 -
Vifa1g10191 460 FunFam Carboxypeptidase 362 457 - -
Vifa1g10191 460 FunFam Carboxypeptidase 314 459 - -
Vifa1g10191 460 FunFam Serine carboxypeptidase-like 11 27 460 - -
Vifa1g10191 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 444 IPR001563 GO:0004185|GO:0006508
Vifa1g10191 460 Gene3D - 315 459 - -
Vifa1g10191 460 SUPERFAMILY alpha/beta-Hydrolases 33 457 IPR029058 -
Vifa1g10191 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Vifa1g10191 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Vifa1g10191 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Vifa1g10191 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10191 Vifa-Chr1 1694466574 1694469252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10191 27 56 Calmodulin-binding Proteins AT2G22960 70.000 3.85e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10191 K16296 - gmx:100792006 709.523