Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10186 ATGAGACTCTCTTCAGCTGGTTTTAGTCCTCCACCACCCCAAGAAGGGGAAAAGAGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTCTCTTTGCCAGCAATTGGAAGCAGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCAACCAACAAGGAAGTGGATGCTCATATTCCAAATTATCCAAGCTTACCTCCTCAGCTTGTTTGCCAACTTCATAATTTGACTATGCATGCTGACGTGGAGACCGATGAAGTGTATGCACAAATGACCCTGCAACCGCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCTGCTGAGTTGGGCACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAGACCTTGACTGCTAGTGACACAAGCACTCACGGTGGATTCTCCGTGCCTCGCCGCGCGGCTGAAAAAGTGTTTCCTCCATTGGACTTTTCCCAACAACCCCCTGCACAAGAGTTAATAGCAAGGGATTTGCATGGCAATGAATGGAAATTCCGACATATATTCCGGGGGCAGCCGAAAAGGCATCTACTTACAACCGGGTGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAACGAACAGAACCAATTGCTTCTTGGCATACGTCGTGCTAGCCGACCACAAACTGTGATGCCTTCATCGGTGTTGTCAAGTGATAGTATGCACTTGGGACTTCTCGCTGCAGCAGCTCATGCAGCTGCAACCAATAGTCGTTTCACTATTTTCTATAACCCACGTGCTTGCCCGTCAGAATTTGTCATACCCTTAGCAAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTGTTTGAAACAGAAGAGTCTAGTGTGCGACGATACATGGGTACAATAACTGGCATCAGTGACTTGGATTCTGCCCGGTGGCCAAACTCACATTGGCGCTCAGTAAAGGTTGGATGGGATGAATCCACTGCCGGAGAAAGGCAACCAAGAGTATCTTTGTGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCTCCATTTCCCCTTAGGCTTAAACGACCGTGGCCTTCTGGTTTGCCTTCATTCCATGGCATGAAAGATGACGATTTTGGCATGAATTCTCCTTTGCTGTGGCTTCGAGACAGTGATAGAGGACTTCAGTCACTTAATTTTCAAGGGATTGGGGTTAACCCTTGGATGCAGCCGAGATTTGATACTTCCATGCTGAATATGCAACCGGATGTGTATCAAGCTGTGGCTGCTGCTGCACTTCAAGACATGAGGAGTATCGATCCCTCCAAACAGCATCCTGGTTCCTTACTTCAATTTCAGCAACCATCAAACTTCCCGAACAGGACTGCTGCTTTAATGCAGGCGCATATGTTGCAACAAGCACAATCTCAACAGGCTTTTCAAAATAATCAGGACAATCAGAATCTGTCGCAATCTCAGCAACAAACTCAGACTCATACTCAACACCATCCGCAGCACCAGCACTCATTCAATAATCACCTCCATCATCATACCCAGCAGCAGCAACAACAGCAACAAACTCAACAGCAAGTGATGGATAATCATCAGATATCTGGTTCGATCTCTACAATGTCACAGTTTATTTCAGCGCCTCAACCGCAGTCACCACCACCTATGCAAGCTCTCCCTTCACTATGTCATCAGCAGAGTTTTTCTGATTCAAATGTAAACTCTTCAACTACTGTTGTTTCTCCTTTGCACAGTATCATGGGTTCATTTCCGCAGGATGAAACATCCCATCTTCTAAGTCTTCCTAGAACAAACTCTTGGGTTCCTGTTCAAAATTCAACCGGTTGGCCCTCGAAGCGTGTTGCGGTGGATCCACTACTTTCTTCGGGAGCTTCTCAATGTATTCTCCCCCATGCGGAACAGGTAGGGCAGACACAGAATACTATATCTCAAAATGCTATTACGTTGCCGCCATTTCCTGGTAGGGAGTGCTCAATAGACCAAGAAGGGAACAATGATCTGCAAAGCACCAATTCTTCATTGAATCATGGAGTAACGCCTAGTATTGGCGAATCTGGTTTCTTGCAAAACCTTGAAAATGGGGAGCAAGGAAACAACCCTCTGAACAAGACCTTTGTGAAGGTTTATAAAGCAGGGTCCTTCGGAAGATCTTTGGATATCACTAAGTTCAGCAGCTACCATGAGCTGCGCAGTGAGCTCGCTCGAATGTTTGGACTAGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCTTGGCCGGAATTTGTGAATAGTGTATGGTGCATCAAGATACTTTCGCCCGAGGAAGTGCAGCAAATGGGCAACACTGGCCTCGGGCTTTTAAACTCGGTTCCCATTCAAAGGCTTTCAAATAGCATCTGCGATGACTATGTGAGCTGTCAAGATCCAAGAAATCTAAGCAGTGGAATAACAACCGTCGGATCTCTAGACTACTAA 2583 0.4619 MRLSSAGFSPPPPQEGEKRVLDSELWHACAGPLVSLPAIGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLVCQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEQNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFHGMKDDDFGMNSPLLWLRDSDRGLQSLNFQGIGVNPWMQPRFDTSMLNMQPDVYQAVAAAALQDMRSIDPSKQHPGSLLQFQQPSNFPNRTAALMQAHMLQQAQSQQAFQNNQDNQNLSQSQQQTQTHTQHHPQHQHSFNNHLHHHTQQQQQQQQTQQQVMDNHQISGSISTMSQFISAPQPQSPPPMQALPSLCHQQSFSDSNVNSSTTVVSPLHSIMGSFPQDETSHLLSLPRTNSWVPVQNSTGWPSKRVAVDPLLSSGASQCILPHAEQVGQTQNTISQNAITLPPFPGRECSIDQEGNNDLQSTNSSLNHGVTPSIGESGFLQNLENGEQGNNPLNKTFVKVYKAGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSNSICDDYVSCQDPRNLSSGITTVGSLDY 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10186 860 MobiDBLite consensus disorder prediction 528 547 - -
Vifa1g10186 860 MobiDBLite consensus disorder prediction 488 519 - -
Vifa1g10186 860 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Vifa1g10186 860 FunFam Auxin response factor 722 816 - -
Vifa1g10186 860 MobiDBLite consensus disorder prediction 488 547 - -
Vifa1g10186 860 Pfam AUX/IAA family 719 812 IPR033389 -
Vifa1g10186 860 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vifa1g10186 860 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 816 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa1g10186 860 Gene3D - 126 229 IPR015300 -
Vifa1g10186 860 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa1g10186 860 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vifa1g10186 860 Gene3D - 292 364 - -
Vifa1g10186 860 ProSiteProfiles PB1 domain profile. 727 811 IPR000270 GO:0005515
Vifa1g10186 860 SMART B3_2 128 230 IPR003340 GO:0003677
Vifa1g10186 860 FunFam Auxin response factor 126 230 - -
Vifa1g10186 860 Gene3D - 724 816 - -
Vifa1g10186 860 FunFam Auxin response factor 292 364 - -
Vifa1g10186 860 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Vifa1g10186 860 SUPERFAMILY CAD & PB1 domains 726 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10186 Vifa-Chr1 1693208354 1693212885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10186 525 860 B3 DNA Binding Superfamily AT1G30330 52.868 3.46e-99 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa1g10186 AUX_IAA 5.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10186 - - gmx:100798719 1396.72