Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10165 ATGTTAGAGAGTGGTAGTGATCGTGATTCTGGGATGAGTTTAGAAACGGTTAACTCCAATACACAGAGAACTTCTTTAAGCAGCGCCACTGAAAGCATTTGCAGCACAAGCTTCAGCCGTCTCTCCTTCGAACTCCTTCCGTCATCCTCACCGGAGACTCTCTCCATCAAACCTCATCGCTCCTCCGATTTCGCCTACTCCGCCATCCGCAAATCCGGTCTCACCTTCCGTGACTTCCACCTTCTTCGCCGCATAGGCTCCGGTGACATCGGCACAGTCTACCTCTGTCGCTTACGTGACTCCTCCGTAAACTACATCAACGACGAGGATAGCTCGTTCTACTACGCGATGAAGGTTGTTGACAAAGACGCTGTTGCTCTCAAGAACAAGTCTCACAGAGCAGAAATAGAGAGAAAGATTCTCAAGATGCTTGATCATCCTTTTCTTCCTAGTCTCTACGCGGAGTTCGAAGCTTCTAATTTCTCTTGCATTGTTATGGAGTTTTGCTCCGGCGGAGACTTGCACTCTCTCCGTCACCGCCACCCTCGTAACCGTTTCTCTCTCTCCTCAGCAAGGTTTTACGCGGCTGAGGTACTGGTGGCATTGGAGTATCTTCACATGTTAGGAATAATCTACAGAGATCTAAAACCTGAAAACGTGTTAGTCAGATCAGACGGTCACATCATGCTCTCAGATTTTGATCTATCACTATGCTCTCACGCAATCCCAGCCGTTGAGTTATCTCGAGACAATCCACCATCGGATGTATCCTCATCCTGCACACGTCCGCACTCCATTCCTTCCCCTTTTAAATGTCTCTCAAAGCGAGTTTTCCGGTCCAGAAAGGTTCAAACATTACAATCGAACCGGCTTTTCGTTGCTGAACCGGTTGAAGCACGGTCTTGTTCATTCGTCGGAACACACGAGTACGTTTCACCGGAAGTAGCTTCTGGAAACTCCCACGGTAACGCTGTGGATTGGTGGTCGTTTGGGATATTCATCTACGAGATGGTGTACGGAAGAACACCGTTTGCGGGTCCATCGAATGAAGTAACGTTGCGCAACATTATAAAAAAGCCGCTTAGTTTTCCCACTGCTACGCCTTCCAGTGCGCTTGAAATGCACGCGCGGGACCTTATTTCGGGTTTGCTTAACAAAGACCCGGATCGTAGACTCGGGTCAAAGCGTGGCGCGGCGGACGTTAAGATGCATCCGTTTTTTGTTGGGCTTAATTTGGCGTTGATACGGATGGTAACGCCGCCGGAGGTTCCTGGATTGAAAAGACAAAAAACGACGCTGTTTGTCTCCGGGAAAGATAGTAACGGTAACAGAAGTTCTAATAGACAGCATCCTGCTTCGTCGTTTGATTACTTTTAA 1377 0.4837 MLESGSDRDSGMSLETVNSNTQRTSLSSATESICSTSFSRLSFELLPSSSPETLSIKPHRSSDFAYSAIRKSGLTFRDFHLLRRIGSGDIGTVYLCRLRDSSVNYINDEDSSFYYAMKVVDKDAVALKNKSHRAEIERKILKMLDHPFLPSLYAEFEASNFSCIVMEFCSGGDLHSLRHRHPRNRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSHAIPAVELSRDNPPSDVSSSCTRPHSIPSPFKCLSKRVFRSRKVQTLQSNRLFVAEPVEARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFIYEMVYGRTPFAGPSNEVTLRNIIKKPLSFPTATPSSALEMHARDLISGLLNKDPDRRLGSKRGAADVKMHPFFVGLNLALIRMVTPPEVPGLKRQKTTLFVSGKDSNGNRSSNRQHPASSFDYF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10165 458 Gene3D Phosphorylase Kinase; domain 1 77 168 - -
Vifa1g10165 458 SUPERFAMILY Protein kinase-like (PK-like) 53 424 IPR011009 -
Vifa1g10165 458 FunFam protein kinase PINOID 2 77 168 - -
Vifa1g10165 458 Gene3D Transferase(Phosphotransferase) domain 1 169 236 - -
Vifa1g10165 458 SMART serkin_6 79 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10165 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vifa1g10165 458 CDD STKc_phototropin_like 77 424 - -
Vifa1g10165 458 Gene3D Transferase(Phosphotransferase) domain 1 299 425 - -
Vifa1g10165 458 MobiDBLite consensus disorder prediction 9 25 - -
Vifa1g10165 458 MobiDBLite consensus disorder prediction 433 453 - -
Vifa1g10165 458 ProSiteProfiles Protein kinase domain profile. 79 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10165 458 FunFam protein kinase PINOID 169 237 - -
Vifa1g10165 458 PANTHER FLIPPASE KINASE 1-RELATED 21 427 - -
Vifa1g10165 458 MobiDBLite consensus disorder prediction 429 458 - -
Vifa1g10165 458 FunFam serine/threonine-protein kinase D6PK-like 299 425 - -
Vifa1g10165 458 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g10165 458 Pfam Protein kinase domain 301 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10165 458 Pfam Protein kinase domain 79 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10165 Vifa-Chr1 1687801177 1687802666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10165 7 458 AGC Kinase Gene Family AT2G34650 66.304 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa1g10165 Pkinase 2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10165 - - gmx:100795536 672.544