Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10162 ATGAGTTTCTCTTTCTCAAGGCATGATTGTTGTGATATGGAGGATGAGATTGAAGCATGTAAGTTTCCAAGACTTGGAAATGTTGTGAACGAGAATTTAGGTTCGGGTAGAAGGAAGAATGTTGTTGGAAGTGATTTTCAGAGATGGCAGCGGGAAGAAGAAAACTCATCGAGAATCGTTAGAGTGTCGAGAGGGTCGGGTGGAAAAGATAGGCACAGCAAAGTAATGACTTCCAAGGGTTTGAGAGATAGAAGAGTTAGGCTTTCGGTTACAACGGCGATTCAGTTCTATGATCTTCAAGATAGACTTGGTTATGATCAACCGAGTAAAGCTGTTGATTGGTTGATTAAAGCTGCTTCGGATTCTATCTCGGAGCTACCTTCTCTCAATAACGCGTTTACTCAAATTGATGACAAGAGTGGTGAGAAAACAAGAGAACACGAGTTTGAGTTTGAGTTTGAGTTTGATGAGAGACAGAACAAGAGCCTTTGTTTGTCTAAGTCTAAGTCTGCTTGTAGCAGCACTTCTGAGACAAGTAAAGAAAATGACTCTAGCATTGCACATCAAAATCAACATCATCTTCAACTTGGTCAAAGCATGTCTCAAACAGCTTCTTTTACTGAGTTACTCACTGCCGGAATTGGTCATAATAATCAGATTCATCATGCTGGTTTCTCAGGACATTCCCCATTTGCTACTGAAAATGAAAACCAGTCAGATATGATTCACCTGCAGCATTTTCCATTCATGTCTGACCAACATCTTATGCAACCATCTGTGGTTAATTCTTCTTCATCCTCGTCTTCTCATCATGATAATTACAATCTCAACTTCACCATATCCTCTTCGGGCCTTGTTGGTTACAATAGGGGGACCCTTCAGTCCAATTCACTTTTGCCTCACTTCCACAGGTTTTCAACTATGGATCATGGATCATCAACAACAACATCATCATCCAATAATTTACCTACTTTCTTCACAGGACCTCCTGTTCCTCATCCTCCTCTTGCTGCTACTCCATCCATGGATCAACAACTTCATTTCTCACCTCTCTTTGACGCTCGCTTGCAACTTTTCTATCGCGATGGAAGCCACCATTCAGATCAGAAGGACAACAAATGCAATAAGAACTAA 1134 0.4101 MSFSFSRHDCCDMEDEIEACKFPRLGNVVNENLGSGRRKNVVGSDFQRWQREEENSSRIVRVSRGSGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVDWLIKAASDSISELPSLNNAFTQIDDKSGEKTREHEFEFEFEFDERQNKSLCLSKSKSACSSTSETSKENDSSIAHQNQHHLQLGQSMSQTASFTELLTAGIGHNNQIHHAGFSGHSPFATENENQSDMIHLQHFPFMSDQHLMQPSVVNSSSSSSSHHDNYNLNFTISSSGLVGYNRGTLQSNSLLPHFHRFSTMDHGSSTTTSSSNNLPTFFTGPPVPHPPLAATPSMDQQLHFSPLFDARLQLFYRDGSHHSDQKDNKCNKN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10162 377 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 39 294 IPR005333 GO:0003700
Vifa1g10162 377 MobiDBLite consensus disorder prediction 309 326 - -
Vifa1g10162 377 Pfam TCP family transcription factor 67 191 IPR017887 -
Vifa1g10162 377 MobiDBLite consensus disorder prediction 309 337 - -
Vifa1g10162 377 ProSiteProfiles TCP domain profile. 68 126 IPR017887 -
Vifa1g10162 377 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10162 Vifa-Chr1 1686194224 1686195357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10162 42 311 TCP Transcription Factor Family AT4G18390 39.104 8.16e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa1g10162 TCP 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10162 - - psat:127079830 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10162 1 1686194224 1686195357 Vifa1g10162 1 1686194224 1686195357 ECH