Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10153 ATGAGGAGGAACTGCAACTTAGAACTCTGCCTTTTTCCTCAATATGGTTCTGCTAACGATCACAACAATCACATGGTTGAAGAAGAAAAAGATAGTGATCAGATGAGTTCAATGCAAAATCCGCAACAGCCATTGACTATTTTCTACGATGGCAAGATGTGTGTTACTCATGTCACTGAGTTTCAGGCCAAATCAATCTTAATGATGGCAAACAAAAAAGTGCAAGAAACAGTGAAGACTCCAACAGGTTCAGAGGCATCAACGCCAACAATGGTACAATCTCCTCATCAATTGTGTAGCCCTGGTCCTGCTCTTTCAATGAAAAGATCTTTGCAACGGTTTCTTCAAAAGAGAAAATATAGGATTCAACAAGCTTCTCCATACAATCATTAG 393 0.3944 MRRNCNLELCLFPQYGSANDHNNHMVEEEKDSDQMSSMQNPQQPLTIFYDGKMCVTHVTEFQAKSILMMANKKVQETVKTPTGSEASTPTMVQSPHQLCSPGPALSMKRSLQRFLQKRKYRIQQASPYNH 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10153 130 ProSiteProfiles Tify domain profile. 38 72 IPR010399 -
Vifa1g10153 130 MobiDBLite consensus disorder prediction 78 100 - -
Vifa1g10153 130 Pfam tify domain 41 71 IPR010399 -
Vifa1g10153 130 SMART tify_2 37 72 IPR010399 -
Vifa1g10153 130 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 29 129 IPR040390 -
Vifa1g10153 130 MobiDBLite consensus disorder prediction 78 103 - -
Vifa1g10153 130 Pfam Jas motif 108 128 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10153 Vifa-Chr1 1682047029 1682047606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10153 1 128 Tify Gene Family AT1G30135 42.963 1.55e-23 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa1g10153 tify 6.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10153 - - gmx:100803886 156.377