Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10152 ATGAAGAGGAATTGCGACTTGGAACTTTGCCTTTATCCTCCATACGTTTCTGATGGAAATCACATGGTTGAAGAAGAAAAAGACATTGATGAGAGTTCAATGCAAAATCAGCAACAGCCACTGACCATTTTCTACGATGGCAAGATGTGTTTTACTGATGTCACTGTGCTTCAGGCCAAATCTATCTTAATGCTGGCAAACAAAAAGGTGCAAGAAACAGTGAAGACACCAACAGGGTCAGAGCCTTCAACACAAACAATAGTACAATCTCCTCATCAATTGTATAGCCCTGGTCCTGCTCTTTCAATGAAAATATCTTTGCAACGATTTCTACAAAAAAGAAAAAATAGGATTCAACAAACTTCTCCATATAATCATTAG 381 0.3806 MKRNCDLELCLYPPYVSDGNHMVEEEKDIDESSMQNQQQPLTIFYDGKMCFTDVTVLQAKSILMLANKKVQETVKTPTGSEPSTQTIVQSPHQLYSPGPALSMKISLQRFLQKRKNRIQQTSPYNH 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10152 126 Pfam Jas motif 104 124 IPR018467 -
Vifa1g10152 126 Pfam tify domain 37 67 IPR010399 -
Vifa1g10152 126 ProSiteProfiles Tify domain profile. 34 68 IPR010399 -
Vifa1g10152 126 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 33 125 IPR040390 -
Vifa1g10152 126 SMART tify_2 34 68 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10152 Vifa-Chr1 1681955694 1681956489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10152 1 125 Tify Gene Family AT1G30135 45.113 1.88e-26 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa1g10152 tify 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10152 - - gmx:100803886 159.458