Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10127 ATGCCATTTTCAAGTATCAAAGCCTTCTTCCAGAGGTTCTGGTTGGACGAAATGGAAATGGGAAGCTATACACATAGCAGCTTTTTGTCTAGTGATCTTCTACCGTCTCTTGGCGCTCAAATAAACCAAGAAACTAAACTCCGAAAATACATAATCTATCCGTTCAATCCTAAATATAGGGTTTGGGAGCTGTTGCTGGTTGTTCTAGTCATATACTCAGCTTGGATATGCCCTTTTGAGTTTGCCTTTCTGAGTTATAAGGAAAATGGATTATTCATTATAGACAACATTGTCAATGGCTTTTTTGCCATTGACATTGTGCTTACATTCTTCGTTGCACACCACGATAGCCATTCGTATCTTCTCATTGATGATCCAAAGAAAATCGCAATCAGTTACATATCTACCTGGTTTGCTTTGGATATCTGCTCCACAGCACCACTTGAGACCATTAGCCTCCTACTCACGAATTATAACAGTGAGCTTGGTTTCAAACTTCTTAACATGTTGCGATTATGGCGCCTGAGACGAGTCAGTTCTCTGTTTGCAAGACTCGAAAAGGACATTCGCTTCAACTACTTCTGGGTTAGGTGCACAAAGCTCACTGCTGTAACCTTGTTTGCAGTGCACTGTGCAGGATGCGTTAACTATCTCATTGCAGATAGGTACCCTGATTCCAAGAGAACTTGGATAGGTGCTATGTTCCCGAATTTTAAACAAGAGAGTCTTTGGGACAGATATGTAACTTCGATATACTGGTCCATTGTTACGCTTACTACGACGGGATACGGAGACTTACATGCAGAGAATACTGTAGAGATGTTGTTTGATATTGCTTACATGTTGTTCAACTTGGGTTTAACATCATACATCATTGGCAACATGACTAACCTTGTAGTTCACTGGACCAGCCGCACCCAAAATTTTAGGGATACCGTCAAAGCAGCTTCGGAGTTTGCTTCAAGAAATCATCTGCCACATCGCGTACACAATCAAATGCTGGCACACATATGTTTAAGGTTCAAAACAGAAGGACTGAAGCAGCAAGAAGCATTAAATGATCTTCCAAAGGCAATTCGTTCAAGCATAGCACACCATCTGTACTTTCCTGCCATGCAAAAGGTTTACCTCTTCCAAGGAGTCTCTCATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCAGAATATTTTCCACCGACCGAAGATGTGATACTGCAAAATGAGTCTCCAACCGACCTTTATATACTGGTTACAGGAGCAGTGAATTTCGTTCACTACAACGATGGGAATGATCAAGTGGTTCTTGGCAAGGCAACTGCAGTAGATACTTTTGGCGAGTTCGGAGTTTTGTATCATGTACTGCAGCCTTTCACCGTTCGTACCACAGAACTTTCTCAGATTTTAAGAGTCAACAAAACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGATGCACAGATTATAATGGATAACCTTTTAACGAGATTAAAGGGGCATGAAGGATTCGGCTTTGAATATCCACATACAGATCATGGATTAGTTCTACATGAACTGCTTCATGGAGTCGTTAATAACACGATACCTGAGGATGGCAAAAGTGATGTCCATTCTGCTGTGCTGCCTCTGCATAAGGGGAAACTTGATATTGTTGAAATTCTGCTTGAAAGAGATGCAAAAGCAAAGAACCCTGATAACATAGGGTGGACACAAAAAGCTCTAGTACAACAGTTAAAAAACAAGAGCATTTCTGATCATACATTGAATTGTGAAAGCGTGAAGAAATCAGATGAACATAGAATAGAGATTATTGAGCCACGAAATCTTAAACTTGGCAGGAATGGCTCAACCAGAAATAGTAAACAGGATGGTATTAGAACTAATAACTTCCCATTAGAGAAAGTACACACAAACTCCAATTCAAGAAATTCCAATTGTCCGGGTGAAATAGAAATGGCAAGCTTCACCAAAAAGAGGGTAACAATCCATTCACCAAGTGGATGGAAAAGTAGCTCGCATGAACAACACGGAAAACTGATAATCCTACCTGATTCATTAGAAGAGTTGCTCAAAATTGCTGGTGAAAAATTCGGTGGCTTCAAAGCCACAAAAGTAACTAATGAAGAGAATGCAGAGATAGACGACATTGATGTCATTCGAGATGGTGACCATCTCTTTCTTCTAGGCAGCGATAGTGACAATTTGAGTACATGA 2217 0.4037 MPFSSIKAFFQRFWLDEMEMGSYTHSSFLSSDLLPSLGAQINQETKLRKYIIYPFNPKYRVWELLLVVLVIYSAWICPFEFAFLSYKENGLFIIDNIVNGFFAIDIVLTFFVAHHDSHSYLLIDDPKKIAISYISTWFALDICSTAPLETISLLLTNYNSELGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWVRCTKLTAVTLFAVHCAGCVNYLIADRYPDSKRTWIGAMFPNFKQESLWDRYVTSIYWSIVTLTTTGYGDLHAENTVEMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTQNFRDTVKAASEFASRNHLPHRVHNQMLAHICLRFKTEGLKQQEALNDLPKAIRSSIAHHLYFPAMQKVYLFQGVSHDFLFQLVSEMEAEYFPPTEDVILQNESPTDLYILVTGAVNFVHYNDGNDQVVLGKATAVDTFGEFGVLYHVLQPFTVRTTELSQILRVNKTSLMNVLQANPGDAQIIMDNLLTRLKGHEGFGFEYPHTDHGLVLHELLHGVVNNTIPEDGKSDVHSAVLPLHKGKLDIVEILLERDAKAKNPDNIGWTQKALVQQLKNKSISDHTLNCESVKKSDEHRIEIIEPRNLKLGRNGSTRNSKQDGIRTNNFPLEKVHTNSNSRNSNCPGEIEMASFTKKRVTIHSPSGWKSSSHEQHGKLIILPDSLEELLKIAGEKFGGFKATKVTNEENAEIDDIDVIRDGDHLFLLGSDSDNLST 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10127 738 ProSiteProfiles KHA domain profile. 660 738 IPR021789 -
Vifa1g10127 738 ProSiteProfiles cAMP/cGMP binding motif profile. 377 497 IPR000595 -
Vifa1g10127 738 Gene3D Jelly Rolls 370 502 IPR014710 -
Vifa1g10127 738 PANTHER POTASSIUM CHANNEL AKT1 519 731 IPR045319 GO:0005249|GO:0006813
Vifa1g10127 738 Pfam Ion transport protein 60 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa1g10127 738 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Vifa1g10127 738 Gene3D Helix hairpin bin 301 367 - -
Vifa1g10127 738 Pfam Cyclic nucleotide-binding domain 397 482 IPR000595 -
Vifa1g10127 738 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g10127 738 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g10127 738 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g10127 738 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g10127 738 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g10127 738 Pfam KHA, dimerisation domain of potassium ion channel 659 728 IPR021789 -
Vifa1g10127 738 SUPERFAMILY cAMP-binding domain-like 304 498 IPR018490 -
Vifa1g10127 738 CDD CAP_ED 377 491 IPR000595 -
Vifa1g10127 738 FunFam Potassium channel KAT2 365 502 - -
Vifa1g10127 738 Gene3D - 59 300 - -
Vifa1g10127 738 SMART cnmp_10 377 495 IPR000595 -
Vifa1g10127 738 FunFam Potassium channel KAT3 61 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10127 Vifa-Chr1 1675695246 1675698846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10127 1 728 Ion Channels AT5G46240 57.923 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10127 K21867 - gmx:100811356 1084.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10127 1 1675695246 1675698846 Vifa1g10127 1 1675695246 1675698846 ECH