Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10118 ATGGACCACTATCCCCGGTCCACTGACCCTTCCCGCTCTGATCCGTCGCCGGAATGGACTGGACCGGACCCCCAAACCGGTCTCGAAGAACCTATGTGGCAATTGGGGCTTGGTGCTGGAGAGGATTCGTATCCACTACGACCTGATGAAGCTGATTGCACTTACTATTTGAGAACAGGTTTCTGTGGCTTTGGTTCTAGGTGCCGGTTTAATCATCCTCGTGACCGTAGCGCGGTTATTGGAGCTGCTTCTAGGACTGTAGGGGAGTATCCAGAACGTGCAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAAGATCTTGCAAATTCGGTGCGTCTTGCAAGTACCATCATCCTAGACAGGCAGGAGGCACTGATGCTAGTCCTGTGTCACTAAATTATTATGGATATCCACTACGTCCGGGTGAAAAGGAGTGTTCCTATTTTGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTTGATCATACAGTTCCCGCTGGTGTCCAAATTCCAGCTTCATCACCTGTTCCCCCAGTTTCACCTTTACATGTACAAGTACCAGCCCCAATATATCCAACCGTACAGCCTCCATCTGGTCCATCATCACAACAAATTGGTGTACTGGTCGCTAGGCCACCTTTACTACCCGGTTCGTTTGTCCAGAGCCCTTATGGGCATGTAGTATTGTCCCCAACCATGGTTCCCTTTTCTGGCTGGGGTCCTTATCAGGCTACTGCACCAAGCCCTGTACTTCCTTCTGGTAATCCTGCTAATGTTGGTTCCACACAGCTTTATGGCATAACCCAGCTACCTTCACCAGGTAATGCCTATACCGGACCTTATCAACCTTCTGCTTCCTCGGTTGGTCCTTCAAGCAGAGGTCATAAGGAGCAGTCATTTCCGGCTAGGCCTAATCAACAAGAGTATCATTATTACTCTAAACCAGAAGAGCTTCCATTTGGTCCATCATATAGGTATAACCAACCACCAGACATGAGTGCACAAAAAGCGAATGTTGTCCTTGGTCCTGCAGGTCTTCCTTTACGCCCGGGGGCAGCACCTTGTACTCATTACACACAGCGTGGCATATGCAAGTTTGGTCCTACGTGCAAATTTGATCATCCTATTGCATCACTGAGTTACAGTCCATCTGCTTCTTCCCTGGCTGATGTGTCAGTTGCACCCCACTTTGTGGGTTCCTCTGTTGGTACTCTTGTTCCTTCATCTTCATCAGAATTGCAGCCGGAACTTACCGCAGGATCCAGCAGAGAGTCTGTCCCATCCAGAATATCTTCATCAGTGAGCACTACAACTGGATCAGCTGGCTTGAATCTGTCAACTGGTGGCCCTGTTTCTCAATCTAGCACGCAGAGTTCTAGTCCTTTACCAGCTGCCAATACCACAAGTAGTAATGTCTCTCACACCTCAAGTTCAGAAATGTGA 1452 0.4855 MDHYPRSTDPSRSDPSPEWTGPDPQTGLEEPMWQLGLGAGEDSYPLRPDEADCTYYLRTGFCGFGSRCRFNHPRDRSAVIGAASRTVGEYPERAGQPVCQYYMRTRSCKFGASCKYHHPRQAGGTDASPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHTVPAGVQIPASSPVPPVSPLHVQVPAPIYPTVQPPSGPSSQQIGVLVARPPLLPGSFVQSPYGHVVLSPTMVPFSGWGPYQATAPSPVLPSGNPANVGSTQLYGITQLPSPGNAYTGPYQPSASSVGPSSRGHKEQSFPARPNQQEYHYYSKPEELPFGPSYRYNQPPDMSAQKANVVLGPAGLPLRPGAAPCTHYTQRGICKFGPTCKFDHPIASLSYSPSASSLADVSVAPHFVGSSVGTLVPSSSSELQPELTAGSSRESVPSRISSSVSTTTGSAGLNLSTGGPVSQSSTQSSSPLPAANTTSSNVSHTSSSEM 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10118 483 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
Vifa1g10118 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 378 IPR000571 GO:0046872
Vifa1g10118 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 165 IPR000571 GO:0046872
Vifa1g10118 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Vifa1g10118 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Vifa1g10118 483 SUPERFAMILY CCCH zinc finger 50 76 IPR036855 GO:0046872
Vifa1g10118 483 Gene3D - 44 121 - -
Vifa1g10118 483 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Vifa1g10118 483 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Vifa1g10118 483 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Vifa1g10118 483 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Vifa1g10118 483 Gene3D - 122 173 - -
Vifa1g10118 483 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Vifa1g10118 483 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Vifa1g10118 483 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Vifa1g10118 483 PANTHER PROTEIN PHOSPHATASE RELATED 38 410 - -
Vifa1g10118 483 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g10118 483 SUPERFAMILY CCCH zinc finger 142 167 IPR036855 GO:0046872
Vifa1g10118 483 MobiDBLite consensus disorder prediction 276 307 - -
Vifa1g10118 483 SUPERFAMILY CCCH zinc finger 355 382 IPR036855 GO:0046872
Vifa1g10118 483 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Vifa1g10118 483 MobiDBLite consensus disorder prediction 407 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10118 Vifa-Chr1 1671491084 1671496018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10118 9 447 C2H2 Transcription Factor Family AT5G18550 53.111 1.64e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g10118 zf-CCCH 1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10118 - - gmx:100812433 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10118 1 1671491084 1671496018 Vifa1g10118 1 1671491084 1671496018 ECH
Vifa4g03925 4 1253782400 1253785684 Vifa1g10118 1 1671491084 1671496018 PCT