Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g10118 | ATGGACCACTATCCCCGGTCCACTGACCCTTCCCGCTCTGATCCGTCGCCGGAATGGACTGGACCGGACCCCCAAACCGGTCTCGAAGAACCTATGTGGCAATTGGGGCTTGGTGCTGGAGAGGATTCGTATCCACTACGACCTGATGAAGCTGATTGCACTTACTATTTGAGAACAGGTTTCTGTGGCTTTGGTTCTAGGTGCCGGTTTAATCATCCTCGTGACCGTAGCGCGGTTATTGGAGCTGCTTCTAGGACTGTAGGGGAGTATCCAGAACGTGCAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAAGATCTTGCAAATTCGGTGCGTCTTGCAAGTACCATCATCCTAGACAGGCAGGAGGCACTGATGCTAGTCCTGTGTCACTAAATTATTATGGATATCCACTACGTCCGGGTGAAAAGGAGTGTTCCTATTTTGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTTGATCATACAGTTCCCGCTGGTGTCCAAATTCCAGCTTCATCACCTGTTCCCCCAGTTTCACCTTTACATGTACAAGTACCAGCCCCAATATATCCAACCGTACAGCCTCCATCTGGTCCATCATCACAACAAATTGGTGTACTGGTCGCTAGGCCACCTTTACTACCCGGTTCGTTTGTCCAGAGCCCTTATGGGCATGTAGTATTGTCCCCAACCATGGTTCCCTTTTCTGGCTGGGGTCCTTATCAGGCTACTGCACCAAGCCCTGTACTTCCTTCTGGTAATCCTGCTAATGTTGGTTCCACACAGCTTTATGGCATAACCCAGCTACCTTCACCAGGTAATGCCTATACCGGACCTTATCAACCTTCTGCTTCCTCGGTTGGTCCTTCAAGCAGAGGTCATAAGGAGCAGTCATTTCCGGCTAGGCCTAATCAACAAGAGTATCATTATTACTCTAAACCAGAAGAGCTTCCATTTGGTCCATCATATAGGTATAACCAACCACCAGACATGAGTGCACAAAAAGCGAATGTTGTCCTTGGTCCTGCAGGTCTTCCTTTACGCCCGGGGGCAGCACCTTGTACTCATTACACACAGCGTGGCATATGCAAGTTTGGTCCTACGTGCAAATTTGATCATCCTATTGCATCACTGAGTTACAGTCCATCTGCTTCTTCCCTGGCTGATGTGTCAGTTGCACCCCACTTTGTGGGTTCCTCTGTTGGTACTCTTGTTCCTTCATCTTCATCAGAATTGCAGCCGGAACTTACCGCAGGATCCAGCAGAGAGTCTGTCCCATCCAGAATATCTTCATCAGTGAGCACTACAACTGGATCAGCTGGCTTGAATCTGTCAACTGGTGGCCCTGTTTCTCAATCTAGCACGCAGAGTTCTAGTCCTTTACCAGCTGCCAATACCACAAGTAGTAATGTCTCTCACACCTCAAGTTCAGAAATGTGA | 1452 | 0.4855 | MDHYPRSTDPSRSDPSPEWTGPDPQTGLEEPMWQLGLGAGEDSYPLRPDEADCTYYLRTGFCGFGSRCRFNHPRDRSAVIGAASRTVGEYPERAGQPVCQYYMRTRSCKFGASCKYHHPRQAGGTDASPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHTVPAGVQIPASSPVPPVSPLHVQVPAPIYPTVQPPSGPSSQQIGVLVARPPLLPGSFVQSPYGHVVLSPTMVPFSGWGPYQATAPSPVLPSGNPANVGSTQLYGITQLPSPGNAYTGPYQPSASSVGPSSRGHKEQSFPARPNQQEYHYYSKPEELPFGPSYRYNQPPDMSAQKANVVLGPAGLPLRPGAAPCTHYTQRGICKFGPTCKFDHPIASLSYSPSASSLADVSVAPHFVGSSVGTLVPSSSSELQPELTAGSSRESVPSRISSSVSTTTGSAGLNLSTGGPVSQSSTQSSSPLPAANTTSSNVSHTSSSEM | 483 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g10118 | 483 | ProSiteProfiles | Zinc finger C3H1-type profile. | 352 | 380 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 355 | 378 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 142 | 165 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 74 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 96 | 120 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | SUPERFAMILY | CCCH zinc finger | 50 | 76 | IPR036855 | GO:0046872 | |
Vifa1g10118 | 483 | Gene3D | - | 44 | 121 | - | - | |
Vifa1g10118 | 483 | SMART | c3hfinal6 | 352 | 379 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | SMART | c3hfinal6 | 93 | 120 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | SMART | c3hfinal6 | 47 | 74 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | SMART | c3hfinal6 | 140 | 167 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | Gene3D | - | 122 | 173 | - | - | |
Vifa1g10118 | 483 | SUPERFAMILY | CCCH zinc finger | 96 | 121 | IPR036855 | GO:0046872 | |
Vifa1g10118 | 483 | ProSiteProfiles | Zinc finger C3H1-type profile. | 140 | 168 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 75 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | PANTHER | PROTEIN PHOSPHATASE RELATED | 38 | 410 | - | - | |
Vifa1g10118 | 483 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Vifa1g10118 | 483 | SUPERFAMILY | CCCH zinc finger | 142 | 167 | IPR036855 | GO:0046872 | |
Vifa1g10118 | 483 | MobiDBLite | consensus disorder prediction | 276 | 307 | - | - | |
Vifa1g10118 | 483 | SUPERFAMILY | CCCH zinc finger | 355 | 382 | IPR036855 | GO:0046872 | |
Vifa1g10118 | 483 | ProSiteProfiles | Zinc finger C3H1-type profile. | 93 | 121 | IPR000571 | GO:0046872 | |
Vifa1g10118 | 483 | MobiDBLite | consensus disorder prediction | 407 | 483 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g10118 | Vifa-Chr1 | 1671491084 | 1671496018 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g10118 | 9 | 447 | C2H2 Transcription Factor Family | AT5G18550 | 53.111 | 1.64e-138 | 405 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vifa1g10118 | zf-CCCH | 1e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g10118 | - | - | gmx:100812433 | 665.996 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g10118 | 1 | 1671491084 | 1671496018 | Vifa1g10118 | 1 | 1671491084 | 1671496018 | ECH | |
Vifa4g03925 | 4 | 1253782400 | 1253785684 | Vifa1g10118 | 1 | 1671491084 | 1671496018 | PCT |