Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10115 ATGTCTACCTCAAGAACCTCATCAAACAGTTTTCTCAAAGGACATGATCATCAACACAATCAAACTCAAATAGACTTATCTCTACTTCAACGGAACACGTCGGTTTACAACGACAAAAGAGGAAGAAGAAAACAAGTAGAAGAAGGTAGGTTTCTTGGTGTAAGGAGAAGACCTTGGGGTAGATATGCAGCTGAAATCAGAGATCCTAATACTAAAGAAAGACATTGGTTAGGAACATTTGATACTGCTCAAGAAGCTGCTTTTGCTTATGATAGAGCTGCTCTTTCCATCAAAGGTAGCGATGCTAAAACAAATTTCATATATTCAACTTCTTCTGAATCTCATGAAACCAATCTTCACAATGTTGTTGTTACTCCTTTAGATCCTCAAAAAACACAACCAGTTACCAACCAAACTAGCCTCTCTCAGCTTGATGGTAATTCTCATTTGAACAATGAGAATTTGTTCTTCTCTAATGATTCTACTGACTCAGGCTATCTTGAATGCATTGTTCCTGTTAACTGTTTCAAACCTATTTCAAATTCCAACAATTCTAACTTTGATCATCAGAGCAATGCAAGTGGTTCAAGTGAAAATCATCGCCAAAATGTTGTTGATTCCATTAGTACAGCAAATTTCATGCAGGGTCAATCGACTCTCGACTACAATGCATTCTCTCAAGAAGCATTAAACATTGGTACAAGTGAAAGTAGAGAAGGATTATGGGATTGCAATTACAATGAACTTTCAGCTATTTTTAACAAACCGTTGAGTAATGAAAATCCAAACTATGAACTAATGACAACTCGTGATGTTTCTTCATATGCCTATTCTAATCCAGCATATTCTTCTTTCGGCGAAGTTGACATGGAATACTCGCTCTTTTGA 888 0.3649 MSTSRTSSNSFLKGHDHQHNQTQIDLSLLQRNTSVYNDKRGRRKQVEEGRFLGVRRRPWGRYAAEIRDPNTKERHWLGTFDTAQEAAFAYDRAALSIKGSDAKTNFIYSTSSESHETNLHNVVVTPLDPQKTQPVTNQTSLSQLDGNSHLNNENLFFSNDSTDSGYLECIVPVNCFKPISNSNNSNFDHQSNASGSSENHRQNVVDSISTANFMQGQSTLDYNAFSQEALNIGTSESREGLWDCNYNELSAIFNKPLSNENPNYELMTTRDVSSYAYSNPAYSSFGEVDMEYSLF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10115 295 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 204 - -
Vifa1g10115 295 Pfam AP2 domain 53 99 IPR001471 GO:0003700|GO:0006355
Vifa1g10115 295 SUPERFAMILY DNA-binding domain 51 108 IPR016177 GO:0003677
Vifa1g10115 295 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Vifa1g10115 295 FunFam Ethylene-responsive transcription factor 2 50 108 - -
Vifa1g10115 295 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Vifa1g10115 295 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vifa1g10115 295 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g10115 295 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Vifa1g10115 295 CDD AP2 50 106 IPR001471 GO:0003700|GO:0006355
Vifa1g10115 295 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10115 Vifa-Chr1 1670542239 1670543126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10115 21 178 AP2-EREBP Transcription Factor Family AT5G18560 42.424 8.44e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g10115 AP2 1.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10115 - - mtr:11443354 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03923 4 1252726415 1252727410 Vifa1g10115 1 1670542239 1670543126 PCT