Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10106 ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACACTAAAGGTGTGAAGGAAGTTTCCAAGAAAGAGGGGTTTAAGGAAGGTTCTGGTCCTCAATCTCATCACCCCACTAGGGTTAGCTCAGATAAATCGAAATCACGAAGTGTATCAGATTCTAAGAAGGAAACGCCAGCTCCAAAGGATGGACCAACGGCACATATTGCTGCACAAACATTTACATTTCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCAGAGTGTTTATTAGGCGAAGGAGGTTTTGGACGTGTTTACAAAGGTCGCCTTGAGAGCACGGGACAGGTAGTTGCTGTAAAACAGCTTGACCGAAATGGACTTCAAGGAAATCGAGAGTTTTTGGTGGAAGTTCTCATGCTCAGCCTCTTACATCACCCAAACCTTGTGAACTTAATTGGTTATTGTGCCGATGGGGATCAGCGGCTTCTTGTTTATGAGTTTATGCCATTGGGATCTTTGGAGGATCATTTACATGATCTTCCTCCTGACAAGGAGCCTCTAGACTGGAACACAAGGATGAAAATAGCAGCTGGTGCAGCAAAGGGATTGGAATATTTGCATGACAAAGCGAACCCGCCTGTGATATACCGAGACTTAAAATCATCCAACATCCTCCTAGACGATGATTTTCATCCTAAGTTATCAGATTTTGGGCTGGCAAAACTTGGTCCAGTTGGTGACAAGACTCATGTATCTACTCGAGTAATGGGAACATATGGCTATTGTGCCCCAGAATATGCTATGACAGGTCAACTAACTCTCAAATCAGACGTCTATAGTTTCGGAGTTGTCTTCCTTGAACTCATTACCGGGCGCAAGGCTATTGATAATACGCGCGGGCATGGTGAGCATAATCTCGTGGCATGGGCTCGACCTTTATTTAAAGACCGCAGGAAGTTTCCCAAAATGGCTGATCCACTACTTCAAGGCCGATATCCAATGCGAGGACTGTACCAGGCACTTGCAGTTGCAGCAATGTGTTTGCAGGAACAAGCTGCCACAAGACCTCTTATAGGAGATGTAGTGACTGCTCTCACATATCTAGCCTCCCAGACATTTGACCCGAATGCATCCACTCAGTCAAACAGGCTCGGTTCATCAACTCCTAGGATGAGGACAGACAGTATGGATAGTCCCGACCGCAGGCAGCTTGGTTCTCCATCTACCCACAGAAACTCACCTGACTTCAGGAAGAGAGACAGCAGGGATCCAAGTGAGTTGAGCAGGGTTGACACCGGTGGCAGCGGGTCAGGTAGAAAATGGGGGGGAATGGATGATCTGGAAAGGCATGATTCTCAGAGAGAAAGCCCTGTAAATACCGGAAGAGCTAGAGAGACTCCAAGGAACCGTGACCTGGACAGAGAACGCGCAGTTGCGGAAGCAAGAGTATGGGGAGAGAATTGGAGAGAGAAGAAACGAGCAAATGCAATGGGAAGCTTTGATGGTACAAATGAATGA 1506 0.4675 MGGCFPCFGSSNKEDTKGVKEVSKKEGFKEGSGPQSHHPTRVSSDKSKSRSVSDSKKETPAPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDDDFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTFDPNASTQSNRLGSSTPRMRTDSMDSPDRRQLGSPSTHRNSPDFRKRDSRDPSELSRVDTGGSGSGRKWGGMDDLERHDSQRESPVNTGRARETPRNRDLDRERAVAEARVWGENWREKKRANAMGSFDGTNE 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10106 501 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Vifa1g10106 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vifa1g10106 501 MobiDBLite consensus disorder prediction 482 501 - -
Vifa1g10106 501 MobiDBLite consensus disorder prediction 438 454 - -
Vifa1g10106 501 MobiDBLite consensus disorder prediction 370 389 - -
Vifa1g10106 501 FunFam Serine/threonine-protein kinase PBS1 60 163 - -
Vifa1g10106 501 MobiDBLite consensus disorder prediction 1 69 - -
Vifa1g10106 501 Pfam Protein kinase domain 92 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10106 501 Gene3D Phosphorylase Kinase; domain 1 58 163 - -
Vifa1g10106 501 FunFam Serine/threonine-protein kinase PBS1 164 379 - -
Vifa1g10106 501 PANTHER OS07G0668900 PROTEIN 4 374 - -
Vifa1g10106 501 MobiDBLite consensus disorder prediction 14 32 - -
Vifa1g10106 501 MobiDBLite consensus disorder prediction 408 423 - -
Vifa1g10106 501 CDD STKc_IRAK 93 362 - -
Vifa1g10106 501 MobiDBLite consensus disorder prediction 41 63 - -
Vifa1g10106 501 SUPERFAMILY Protein kinase-like (PK-like) 68 361 IPR011009 -
Vifa1g10106 501 Gene3D Transferase(Phosphotransferase) domain 1 164 382 - -
Vifa1g10106 501 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10106 501 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10106 501 MobiDBLite consensus disorder prediction 370 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10106 Vifa-Chr1 1668559166 1668562804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10106 4 366 Glycoside Hydrolase AT3G07070 66.209 1.33e-172 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa1g10106 Pkinase 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10106 - - gmx:100814575 890.182