Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g10105 | ATGGCGAAAGCTTCGAAGCAACAAGCTTCTTCCGACGAAGAATTCTCCAACTCGTCGAGCTCATCGGAGGAAGAGCAAGTGAATCAACAGATCAACGAAGAAGAAGATGAAGAGGAGCTGGAAGCTGTAGCTCGTGCGGCCAGTTCCGACGATGATGAAGTTACCGGTGATAATCCGGCGGATTCCGATGAAGACGCTGCTGCTGAAGACGCTGACGACGATGAACAGGGAGGAGATGATGATGCTCCTGAAATCAGCAAACGTGAGAAGGCTAGACTAAAAGAAATGCAGAAAATGAAGAAGCAGAAAATTCAGGAGATATTGGATACTCAGAATGCTGCCATTGAAGCTGACATGAACAATAGAGGAAAGGGACGTTTGAAGTATCTGTTACAGCAGACTGAGCTGTTTGCACATTTTGCAAAAGGTGATTCATCATCATCACAAAAGAAGGCAAGAGGAAGTGGCCGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTACCTGAAGGGAGAAGAAGATGGTGTTGCAAACACTCGTCTGTTGACACAACCATCATGTATTCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAATTGGCTCATTAGATTGTATGAGAATGGAATAAATGGAATTCTGGCCGATGAAATGGGGCTCGGTAAAACATTGCAAACTATATCTTTAATGGGTTACTTGCACGAGTTCAGAGGAATTAAAGGTCCTCATATGGTGGTTGCCCCAAAATCAACTCTTGGGAATTGGATGAATGAGATTCGTCGCTTTTGTCCTATTCTGCGTGCTGTAAAATTCCTTGGCAACCCTGAAGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCTGGGAAGTTTGATGTTTGTGTTACAAGTTTTGAAATGGCTATCAAGGAGAAGTCTACTTTACGTCGATTTAGTTGGCGCTACATAATTATTGACGAAGCTCACAGAATCAAGAATGAGAATTCATTGCTTTCTAAAACAATGAGGATTTTCAATACAAACTATCGCCTCCTCATTACTGGCACACCACTTCAGAATAATCTCCACGAACTTTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACCTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACATAAGGTTCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCGGATGTTGAGAAAGGGTTGCCACCAAAAAAAGAAACCATTCTTAAAGTTGGCATGTCACAGATGCAGAAACAGTATTATAAAGCCTTACTGCAGAAGGATCTCGAGGTTGTCAATGCCGGTGGAGAACGGAAGCGGCTCCTGAATATAGCTATGCAACTGCGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGATCATCTCATTACTAGTGCTGGTAAAATGGTGCTTTTGGATAAGTTGCTTCCTAAATTAAAGGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTCCGGGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATCGTGATGCCTCCATTGAGGCTTACAACAAACCGGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGTGGTCTTGGTATTAATCTTGCTACTGCTGATGTCGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGATTTGCAGGCTCAGGATCGTGCTCATAGGATAGGTCAGAAAAAAGAAGTTCAAGTGTTCCGTTTTTGCACTGAGTATACAATCGAGGAGAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAACAAGGGCGGTTAGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGGTTTGGAGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCCAAAGGAGAAGAAGCAACTGCGGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCGATCAAATTTAAGATGGATGACACTGCTGAGTTATATGACTTTGATGATGACAAGGACGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAACTGGGTTGAACCACCAAGAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACCTTGCGCCAAGGTGCCCCCACTAAACCAAAGGAGCCTCGCATTCCTAGGATGCCACAGTTGCATGATTTCCAGTTTTTCAACACTCAAAGACTGAGTGAGCTGTATGAAAAGGAAGTGCGTTATCTCATGCAAGCGCATCAGAAGAATCAGGTGAAGGATTCGATAGATGTGGATGAACCAGAAGAGGCAGGAAATCAATTGACTGCTGAAGAGATGGAAGAAAAAGAGTGTCTGCTAGAACAGGGATTTTCATCATGGAGCCGGAAAGATTTTAATACTTTCCTCAGGGCCTGTGAGAAATATGGTCGAAATGATATACAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGATGAGGAAGTTGAAAGATATGCTAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATCAAAAACATAGAGAGGGGAGAGGCTAGAATTTCTCGGAAGGACGAGATCATGAAAGCTATCGGAAAGAAATTGGATCGCTACAAGAATCCTTGGCTAGAGTTGAAAGTACAGTATGGACAAAACAAAGGAAAGCTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGTAACTGGGATGAGTTGAAGGCTGCATTTCGAACATCACCTTTGTTTAGATTTGATTGGTTTGTCAAGTCTCGCACAACCCAGGAACTTGCAAGGAGGTGTGACACCCTCATCCGGTTGGTAGAAAAGGAAAACCAGGAATATGATGAGAGGGAAAGACAAGCTCGCAAAGAGAAGAAGCTTGCCAAGAACACGACTCCAACAAAGCGGGCTTTGGCAAGACAGACTGAGAGTCCATCTTCTGCAAAGAAGCGGAAGCAATCAACTATGGATGATTATGCTAACTCGGGTAAGAGGAGAAAATAA | 3213 | 0.4195 | MAKASKQQASSDEEFSNSSSSSEEEQVNQQINEEEDEEELEAVARAASSDDDEVTGDNPADSDEDAAAEDADDDEQGGDDDAPEISKREKARLKEMQKMKKQKIQEILDTQNAAIEADMNNRGKGRLKYLLQQTELFAHFAKGDSSSSQKKARGSGRHASKVTEEEEDEEYLKGEEDGVANTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRIFNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTLRQGAPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEAGNQLTAEEMEEKECLLEQGFSSWSRKDFNTFLRACEKYGRNDIQSIASEMEGKTDEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNTTPTKRALARQTESPSSAKKRKQSTMDDYANSGKRRK | 1070 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g10105 | 1070 | SMART | sant | 948 | 1009 | IPR001005 | - | |
| Vifa1g10105 | 1070 | SMART | sant | 846 | 895 | IPR001005 | - | |
| Vifa1g10105 | 1070 | MobiDBLite | consensus disorder prediction | 1048 | 1070 | - | - | |
| Vifa1g10105 | 1070 | Pfam | Helicase conserved C-terminal domain | 498 | 610 | IPR001650 | - | |
| Vifa1g10105 | 1070 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 180 | 410 | IPR027417 | - | |
| Vifa1g10105 | 1070 | SUPERFAMILY | Homeodomain-like | 901 | 1023 | IPR009057 | - | |
| Vifa1g10105 | 1070 | Gene3D | iswi atpase | 901 | 933 | - | - | |
| Vifa1g10105 | 1070 | Gene3D | - | 416 | 708 | IPR027417 | - | |
| Vifa1g10105 | 1070 | SUPERFAMILY | Homeodomain-like | 849 | 899 | IPR009057 | - | |
| Vifa1g10105 | 1070 | MobiDBLite | consensus disorder prediction | 1 | 98 | - | - |
Showing 1 to 10 of 42 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g10105 | K11654 | - | gmx:100809750 | 1893.24 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa1g10105 | 1 | 1668266559 | 1668275411 | Vifa1g10105 | 1 | 1668266559 | 1668275411 | ECH | |
| Vifa4g03904 | 4 | 1246904698 | 1246922246 | Vifa1g10105 | 1 | 1668266559 | 1668275411 | PCT |
Showing 1 to 2 of 2 entries