Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10105 ATGGCGAAAGCTTCGAAGCAACAAGCTTCTTCCGACGAAGAATTCTCCAACTCGTCGAGCTCATCGGAGGAAGAGCAAGTGAATCAACAGATCAACGAAGAAGAAGATGAAGAGGAGCTGGAAGCTGTAGCTCGTGCGGCCAGTTCCGACGATGATGAAGTTACCGGTGATAATCCGGCGGATTCCGATGAAGACGCTGCTGCTGAAGACGCTGACGACGATGAACAGGGAGGAGATGATGATGCTCCTGAAATCAGCAAACGTGAGAAGGCTAGACTAAAAGAAATGCAGAAAATGAAGAAGCAGAAAATTCAGGAGATATTGGATACTCAGAATGCTGCCATTGAAGCTGACATGAACAATAGAGGAAAGGGACGTTTGAAGTATCTGTTACAGCAGACTGAGCTGTTTGCACATTTTGCAAAAGGTGATTCATCATCATCACAAAAGAAGGCAAGAGGAAGTGGCCGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTACCTGAAGGGAGAAGAAGATGGTGTTGCAAACACTCGTCTGTTGACACAACCATCATGTATTCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAATTGGCTCATTAGATTGTATGAGAATGGAATAAATGGAATTCTGGCCGATGAAATGGGGCTCGGTAAAACATTGCAAACTATATCTTTAATGGGTTACTTGCACGAGTTCAGAGGAATTAAAGGTCCTCATATGGTGGTTGCCCCAAAATCAACTCTTGGGAATTGGATGAATGAGATTCGTCGCTTTTGTCCTATTCTGCGTGCTGTAAAATTCCTTGGCAACCCTGAAGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCTGGGAAGTTTGATGTTTGTGTTACAAGTTTTGAAATGGCTATCAAGGAGAAGTCTACTTTACGTCGATTTAGTTGGCGCTACATAATTATTGACGAAGCTCACAGAATCAAGAATGAGAATTCATTGCTTTCTAAAACAATGAGGATTTTCAATACAAACTATCGCCTCCTCATTACTGGCACACCACTTCAGAATAATCTCCACGAACTTTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACCTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACATAAGGTTCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCGGATGTTGAGAAAGGGTTGCCACCAAAAAAAGAAACCATTCTTAAAGTTGGCATGTCACAGATGCAGAAACAGTATTATAAAGCCTTACTGCAGAAGGATCTCGAGGTTGTCAATGCCGGTGGAGAACGGAAGCGGCTCCTGAATATAGCTATGCAACTGCGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGATCATCTCATTACTAGTGCTGGTAAAATGGTGCTTTTGGATAAGTTGCTTCCTAAATTAAAGGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTCCGGGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATCGTGATGCCTCCATTGAGGCTTACAACAAACCGGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGTGGTCTTGGTATTAATCTTGCTACTGCTGATGTCGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGATTTGCAGGCTCAGGATCGTGCTCATAGGATAGGTCAGAAAAAAGAAGTTCAAGTGTTCCGTTTTTGCACTGAGTATACAATCGAGGAGAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAACAAGGGCGGTTAGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGGTTTGGAGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCCAAAGGAGAAGAAGCAACTGCGGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCGATCAAATTTAAGATGGATGACACTGCTGAGTTATATGACTTTGATGATGACAAGGACGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAACTGGGTTGAACCACCAAGAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACCTTGCGCCAAGGTGCCCCCACTAAACCAAAGGAGCCTCGCATTCCTAGGATGCCACAGTTGCATGATTTCCAGTTTTTCAACACTCAAAGACTGAGTGAGCTGTATGAAAAGGAAGTGCGTTATCTCATGCAAGCGCATCAGAAGAATCAGGTGAAGGATTCGATAGATGTGGATGAACCAGAAGAGGCAGGAAATCAATTGACTGCTGAAGAGATGGAAGAAAAAGAGTGTCTGCTAGAACAGGGATTTTCATCATGGAGCCGGAAAGATTTTAATACTTTCCTCAGGGCCTGTGAGAAATATGGTCGAAATGATATACAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGATGAGGAAGTTGAAAGATATGCTAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATCAAAAACATAGAGAGGGGAGAGGCTAGAATTTCTCGGAAGGACGAGATCATGAAAGCTATCGGAAAGAAATTGGATCGCTACAAGAATCCTTGGCTAGAGTTGAAAGTACAGTATGGACAAAACAAAGGAAAGCTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGTAACTGGGATGAGTTGAAGGCTGCATTTCGAACATCACCTTTGTTTAGATTTGATTGGTTTGTCAAGTCTCGCACAACCCAGGAACTTGCAAGGAGGTGTGACACCCTCATCCGGTTGGTAGAAAAGGAAAACCAGGAATATGATGAGAGGGAAAGACAAGCTCGCAAAGAGAAGAAGCTTGCCAAGAACACGACTCCAACAAAGCGGGCTTTGGCAAGACAGACTGAGAGTCCATCTTCTGCAAAGAAGCGGAAGCAATCAACTATGGATGATTATGCTAACTCGGGTAAGAGGAGAAAATAA 3213 0.4195 MAKASKQQASSDEEFSNSSSSSEEEQVNQQINEEEDEEELEAVARAASSDDDEVTGDNPADSDEDAAAEDADDDEQGGDDDAPEISKREKARLKEMQKMKKQKIQEILDTQNAAIEADMNNRGKGRLKYLLQQTELFAHFAKGDSSSSQKKARGSGRHASKVTEEEEDEEYLKGEEDGVANTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRIFNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTLRQGAPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEAGNQLTAEEMEEKECLLEQGFSSWSRKDFNTFLRACEKYGRNDIQSIASEMEGKTDEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNTTPTKRALARQTESPSSAKKRKQSTMDDYANSGKRRK 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10105 1070 SMART sant 948 1009 IPR001005 -
Vifa1g10105 1070 SMART sant 846 895 IPR001005 -
Vifa1g10105 1070 MobiDBLite consensus disorder prediction 1048 1070 - -
Vifa1g10105 1070 Pfam Helicase conserved C-terminal domain 498 610 IPR001650 -
Vifa1g10105 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 410 IPR027417 -
Vifa1g10105 1070 SUPERFAMILY Homeodomain-like 901 1023 IPR009057 -
Vifa1g10105 1070 Gene3D iswi atpase 901 933 - -
Vifa1g10105 1070 Gene3D - 416 708 IPR027417 -
Vifa1g10105 1070 SUPERFAMILY Homeodomain-like 849 899 IPR009057 -
Vifa1g10105 1070 MobiDBLite consensus disorder prediction 1 98 - -
Vifa1g10105 1070 Gene3D - 934 1037 - -
Vifa1g10105 1070 SMART ultradead3 191 383 IPR014001 -
Vifa1g10105 1070 MobiDBLite consensus disorder prediction 141 175 - -
Vifa1g10105 1070 Coils Coil 86 113 - -
Vifa1g10105 1070 SMART helicmild6 526 610 IPR001650 -
Vifa1g10105 1070 Pfam HAND 759 838 IPR015194 GO:0003677|GO:0006338|GO:0031491
Vifa1g10105 1070 Coils Coil 1003 1034 - -
Vifa1g10105 1070 CDD SF2_C_SNF 496 621 - -
Vifa1g10105 1070 MobiDBLite consensus disorder prediction 81 98 - -
Vifa1g10105 1070 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 758 848 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vifa1g10105 1070 FunFam Chromatin-remodeling complex ATPase 196 411 - -
Vifa1g10105 1070 CDD DEXHc_SMARCA1_SMARCA5 192 412 IPR044754 GO:0005524
Vifa1g10105 1070 Gene3D ISWI, HAND domain 747 845 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vifa1g10105 1070 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g10105 1070 Pfam SNF2-related domain 208 475 IPR000330 GO:0005524|GO:0140658
Vifa1g10105 1070 MobiDBLite consensus disorder prediction 54 80 - -
Vifa1g10105 1070 MobiDBLite consensus disorder prediction 1017 1070 - -
Vifa1g10105 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 693 IPR027417 -
Vifa1g10105 1070 ProSiteProfiles SANT domain profile. 845 897 IPR017884 -
Vifa1g10105 1070 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 372 IPR014001 -
Vifa1g10105 1070 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 500 651 IPR001650 -
Vifa1g10105 1070 Coils Coil 17 41 - -
Vifa1g10105 1070 CDD SANT 849 893 IPR001005 -
Vifa1g10105 1070 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 97 1057 - -
Vifa1g10105 1070 Gene3D - 846 900 - -
Vifa1g10105 1070 MobiDBLite consensus disorder prediction 1017 1034 - -
Vifa1g10105 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 846 900 - -
Vifa1g10105 1070 Gene3D - 196 411 IPR038718 -
Vifa1g10105 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 747 845 - -
Vifa1g10105 1070 Pfam SLIDE 903 1013 IPR015195 GO:0003677|GO:0005634|GO:0006338
Vifa1g10105 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 934 1037 - -
Vifa1g10105 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 416 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10105 Vifa-Chr1 1668266559 1668275411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10105 216 637 RAD5 or RAD16-like Gene Family AT1G02670 26.931 5.96e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa1g10105 SNF2_N 3.3e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10105 K11654 - gmx:100809750 1893.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10105 1 1668266559 1668275411 Vifa1g10105 1 1668266559 1668275411 ECH
Vifa4g03904 4 1246904698 1246922246 Vifa1g10105 1 1668266559 1668275411 PCT