Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10099 ATGGAAGGCTCTGTAGTTGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCAAGCATTACAGAAGAAGATGCAGGATTCGTGCTCCTTGTTGCAATGAAGTTTACTCATGCCGTCATTGTCATAACGAAGCAACGAGCATGTTGAAAAACCCTATTGATCGCCACGAACTGGTTCGGCAGGATGTTGAACAAGTTGTTTGTTCGGTTTGTGACACAGAGCAACCTGTTGCTCAAGTTTGCACTAACTGTGGTATTAGAATGGGGGAATATTTCTGTGACATCTGCAGATTCTTTGATGATGATACGGGGAAACAACAGTTTCATTGTGATGATTGTGGGATCTGCAGAGTTGGCGGGAGTGAGAATTATTTCCATTGCAAGAAGTGCGGGTCTTGCTATTCAATTGCTCTGCGTGATAATCATTTATGCGTGGAGAACTCAATGAGGCATCATTGTCCAATTTGTTATGAGTACCTTTTTGACTCATTGAAAGACACTCGTGTTATGAAATGCGGTCACACAATGCATGGTGAATGCTTTCAAGAGATGCTAAAGCGCGACAAATTCTGTTGTCCCATATGTTCCAAGTCCGTGATGGATATGTCTTTGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACCACCATGCCTGAAGATTATCGTAATAGAAAGGTTTGGATACTCTGCAATGACTGCAACGATACAACTGAAGTTTCCTTCCACATTATTGGGCATAAATGCGGTCACTGCAATTCATATAATACTCGCAATATTGCTCCTCCTGTTCTTCCGCAATAG 804 0.4204 MEGSVVERLDFGKMGYGCKHYRRRCRIRAPCCNEVYSCRHCHNEATSMLKNPIDRHELVRQDVEQVVCSVCDTEQPVAQVCTNCGIRMGEYFCDICRFFDDDTGKQQFHCDDCGICRVGGSENYFHCKKCGSCYSIALRDNHLCVENSMRHHCPICYEYLFDSLKDTRVMKCGHTMHGECFQEMLKRDKFCCPICSKSVMDMSLTWKRIDEEIEATTMPEDYRNRKVWILCNDCNDTTEVSFHIIGHKCGHCNSYNTRNIAPPVLPQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10099 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Vifa1g10099 267 Gene3D - 227 262 - -
Vifa1g10099 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Vifa1g10099 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Vifa1g10099 267 SMART ring_2 153 195 IPR001841 -
Vifa1g10099 267 SUPERFAMILY RING/U-box 152 204 - -
Vifa1g10099 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Vifa1g10099 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Vifa1g10099 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 264 - -
Vifa1g10099 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Vifa1g10099 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 226 IPR013083 -
Vifa1g10099 267 FunFam RING finger and CHY zinc finger domain-containing protein 1 224 265 - -
Vifa1g10099 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Vifa1g10099 267 Pfam Ring finger domain 152 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10099 Vifa-Chr1 1667525327 1667527641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10099 10 266 C2H2 Transcription Factor Family AT3G18290 40.076 1.75e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10099 K10144 - gmx:100812246 541.962