LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g10090	ATGGGTTGTGTGTTTGGTAAAGAGTCATTGGTGGAGGAGAGGAGGGAGGTAGTGAGAGAAGAGAAAGTAGATGTGGGTGGTGGTGGTGGTGGTGGTGGTGGAGAGGTTGAGAATGTGAAAGAGGGTGGAGAGGAGAAGAGAGTGAGGCATGGTGGGGGGGAGAGGAGAAGGCGATCTTCGAAGGAGAATCCGAGGTTGAGTAATCCTTCTAACAATGTTCATGGTGAACAGGTTGCAGCTGGTTGGCCTTCTTGGCTTTCTAAGGTTGCTGGTGAAGCTATCAATGGTTTGGTTCCTAGGAGGGCTGATACTTTTGAGAAGCTTGATAAGATTGGGCAGGGTACTTATAGCAATGTTTACAAGGCGAGGGATACTTTAACGGGGAAGATTGTTGCGTTAAAGAAGGTTCGTTTCGACAATTTAGAGCCGGAGAGTGTGAAGTTCATGGCTAGAGAGATTCTGATTCTGCGACGGTTGGATCATCCCAATGTTGTCAAACTTGAAGGCTTGGTGACTTCTAGAATGTCGTGTAGTTTGTATCTCGTGTTTGAATATATGGCTCATGATTTGGCTGGACTCGCTACAAACCCTGCGATTAAGTTCACGGAGCCTCAGGTAAAATGTTACATGCATCAACTATTTTCTGGGCTGGAACATTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGTTCGAACCTTCTTATCGATAATGATGGAATTCTCAAGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTGATCACAAGCACCCAATGACAAGTAGAGTGGTGACTTTATGGTATCGGCCTCCGGAACTTCTTCTTGGAGCTACTGAGTATGGTGTGGGAGTGGACCTTTGGAGTGCCGGCTGCATTCTTGCAGAATTGTTGGCTGGAAAACCTATCATGCCTGGTCGAACCGAGGTGGAGCAACTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAGAAGTCAAAACTTCCACATGCTACCATTTTTAAGCCTCAACAATCATACAAGCGATGCATAGTGGAGACTTTTAAGAATTTTCCACCGTCATCCCTGCCACTGACTGAGACCCTTCTCGCAATTGATCCAGATGAACGTTTGACTGCCACTGCTGCATTGCACAGTGAATTCTTTATTACAAAGCCTTATGCTTGTGATCCCTCTAGCCTTCCTAAATATCCTCCCAGCAAGGAGATGGATGCGAAACTACGCGATGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAGATCTAATGCTGATGGTGTCAAGAAATCCCGCCCACGTGAGCGAGTAGCAAGGGGACTTCCCGGTCCAGACGCCAATGCTGAACTGCAAGCAAACATCGATAGACGGCGATTAATCACGCACGCAAACGCGAAGAGCAAGAGTGAAAAATTTCCACCTCCACACCAAGACGGTGCTCTAGGCTATCCTCTCGGTTCTTCCCAACACATGGATCCCATGTTCGATCCACCGGACGTTCCATTCAGTTCCACGAACTTGTCACTACCAAAAACAAACATCCACACATGGTCTGGTCCATTGGTAGATCCCGGTAGCGTCGGTGCACCGAGGCGAAAGAAGAAACATGGCAGGTGA	1632	0.4688	MGCVFGKESLVEERREVVREEKVDVGGGGGGGGGEVENVKEGGEEKRVRHGGGERRRRSSKENPRLSNPSNNVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMAHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASFFDPDHKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIVETFKNFPPSSLPLTETLLAIDPDERLTATAALHSEFFITKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKSRPRERVARGLPGPDANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSQHMDPMFDPPDVPFSSTNLSLPKTNIHTWSGPLVDPGSVGAPRRKKKHGR	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g10090	543	MobiDBLite	consensus disorder prediction	469	543	-	-
	Vifa1g10090	543	CDD	STKc_CDK9_like	105	389	-	-
	Vifa1g10090	543	SUPERFAMILY	Protein kinase-like (PK-like)	100	395	IPR011009	-
	Vifa1g10090	543	ProSiteProfiles	Protein kinase domain profile.	105	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g10090	543	FunFam	probable serine/threonine-protein kinase At1g54610	92	187	-	-
	Vifa1g10090	543	MobiDBLite	consensus disorder prediction	16	77	-	-
	Vifa1g10090	543	MobiDBLite	consensus disorder prediction	423	444	-	-
	Vifa1g10090	543	Pfam	Protein kinase domain	105	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g10090	543	FunFam	probable serine/threonine-protein kinase At1g54610	188	429	-	-
	Vifa1g10090	543	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	225	237	IPR008271	GO:0004672\|GO:0006468
	Vifa1g10090	543	ProSitePatterns	Protein kinases ATP-binding region signature.	111	134	IPR017441	GO:0005524
	Vifa1g10090	543	Gene3D	Phosphorylase Kinase; domain 1	93	187	-	-
	Vifa1g10090	543	PANTHER	CELL DIVISION PROTEIN KINASE	103	395	-	-
	Vifa1g10090	543	Gene3D	Transferase(Phosphotransferase) domain 1	188	428	-	-
	Vifa1g10090	543	MobiDBLite	consensus disorder prediction	506	520	-	-
	Vifa1g10090	543	SMART	serkin_6	105	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g10090	543	MobiDBLite	consensus disorder prediction	423	452	-	-
	Vifa1g10090	543	MobiDBLite	consensus disorder prediction	38	63	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g10090	Vifa-Chr1	1666736600	1666739033	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g10090	100	427	Core Cell Cycle Gene Families	AT5G10270	52.035	5.08e-118	356

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vifa1g10090		Pkinase	2.4e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g10090	K08819		-	gmx:100779413	909.827