Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10086 ATGGCTATAATCAAGAACATAATAGAAGACATGAGATCGAGATCTCAAAGGGTGGTTGTAGTTGAGAAAGAAGACAGAGTTCTTGTTGGCGACGGTTTAAGACAGAACTGTTGGTCCAACATGCCACAAGAGCTTCTCCGGGAAGTTCTCCTCCGAATTGAGGCGTCCGAGGATACATGGCCGCCGAGGAAGAATGTTGTCGCATGTGCCGGAGTTTGTCGGAATTGGAGAGTTATCACTAAAGAAATTGTTAAAAAACCTGAACTTTCTGCTAAGATAACTTTCCCCATTTCTGTTAAACAGCCTGGTCCAAGGGAGAATCTCCTTCAATGCTTTATAAAGCGCAACCGATCCACTCAAACGTATTATTTGTTTCTCAGTTTAACTAGTTCGTTAGGTGATGACGGAAAGTTCCTTCTGGCTGCTCGCAAAAGCAGACGTCCTACCTGCACAGATTATATCATCTCTCTAGATGCAGATGATATGTCAAGAGGAAGCAATACCTATGTCGGGAAACTGAGATCAAATTTCCTTGGAACAAAGTTCACAATCTATGACGGCCAGCCACCTCATACCGGAGCTAGGTTTACTAAAAGTCGTTCTACTAGGTTGGTGAATCTAAAGCAGGTTTCACCCAAGGTCCCAACCGGCAACTATCCAGTGGCTCACATCTCATATGAATTGAATGTCCTTGGCTCGAGGGGGCCTAGGAGAATGCACTGTGTCATGAATTCCATTCCATCCTCTTCGATCGAACCAGGAGGAGTAGCTCCTACACAAACTGAGTTTTCTCTAAACAACATAGAAATGTTTCCCCTATTTCCTTTTTTCCGATCAAAATCAAATCGTGTGATGGAGAGTTCTCTATCCGGACCCCTAGTTGGTGATCAAAAAGACGGTTTACTTGTGTTGAAAAACAAGGCTCCGAGGTGGCACGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCACGGACGGGTGACAGTTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTTCCGCCGAAAACGGAACTGCTGGACCAGAACACGATAAGATTATTCTGCAATTCGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTATCGATACCCTATCTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTCGATACCAAGATTGCTTGTGAATAA 1179 0.4436 MAIIKNIIEDMRSRSQRVVVVEKEDRVLVGDGLRQNCWSNMPQELLREVLLRIEASEDTWPPRKNVVACAGVCRNWRVITKEIVKKPELSAKITFPISVKQPGPRENLLQCFIKRNRSTQTYYLFLSLTSSLGDDGKFLLAARKSRRPTCTDYIISLDADDMSRGSNTYVGKLRSNFLGTKFTIYDGQPPHTGARFTKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMNSIPSSSIEPGGVAPTQTEFSLNNIEMFPLFPFFRSKSNRVMESSLSGPLVGDQKDGLLVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASAENGTAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10086 392 ProSitePatterns Tub family signature 1. 322 335 IPR018066 -
Vifa1g10086 392 CDD F-box_AtTLP-like 38 82 - -
Vifa1g10086 392 Gene3D Tubby Protein; Chain A 95 392 IPR025659 -
Vifa1g10086 392 SUPERFAMILY Tubby C-terminal domain-like 87 392 IPR025659 -
Vifa1g10086 392 Pfam Tub family 99 387 IPR000007 -
Vifa1g10086 392 FunFam Tubby-like F-box protein 95 392 - -
Vifa1g10086 392 SUPERFAMILY F-box domain 32 81 IPR036047 GO:0005515
Vifa1g10086 392 ProSitePatterns Tub family signature 2. 377 392 IPR018066 -
Vifa1g10086 392 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Vifa1g10086 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Vifa1g10086 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Vifa1g10086 392 PRINTS Tubby superfamily signature 153 169 IPR000007 -
Vifa1g10086 392 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Vifa1g10086 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Vifa1g10086 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Vifa1g10086 392 PANTHER TUBBY-RELATED 27 390 - -
Vifa1g10086 392 Pfam F-box domain 38 87 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10086 Vifa-Chr1 1666005027 1666007957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10086 12 392 TUB Transcription Factor Family AT2G47900 73.107 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vifa1g10086 Tub 1.7e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10086 K19600 - gmx:100778346 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10086 1 1666005027 1666007957 Vifa1g10086 1 1666005027 1666007957 ECH