Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10081 ATGAACCAGTATCACATCTACGAAGCCATTGGTCGTGGCAGATACTCCACGGTGTATAAAGGCAGAAAGAAGAAGACCATCGAGTATTTTGCGATTAAAAGCGTTGATAAATCTCAGAAAAACAAGGTTCTTCAAGAAGTTAGGATTCTTCACACTTTGGATCACCAAAATGTGCTCAAGTTTTATTCATGGTATGAAACTTCTGCTCACTTATGGTTGGTTTTGGAGTATTGTGTGGGCGGGGATCTACTCTCCATATTACGGCAGGATATTCAGCTTCCTGAAGAATCTGTTAATGAGCTTGCTTGTGACCTCGTTAGAGCTCTGCAGTATTTACATTCAAATGGAATAATTTATTGTGATCTGAAACCATCAAATATTCTACTAGATGAAAATGGACGTACAAAGCTCTGTGATTTCGGATTGGCCAGAAAGTTAAAAGAGATATCGAAAGTTCCTTCTTCTTCGTTGCCTCAAGCAAAACGTGGAACACCCTCTTACATGGCTCCGGAGCTTTTTGAAGATGGCGGAGTTCATTCTTATGCTTCTGATTTCTGGGCTCTAGACCCGACTCCACCTCTCCCTGGAAATCCAAGTCGACCTTTTGTCAATTTAATTAATTCTCTGTTGGTCAAAGATCCAGCCGAAAGAATACAGTGGCCCGAGCTTTGTGGTCATGCCTTTTGGAAAACTAAATTCTCTCTAGTGTCTCTTCCTTCTCAACCTGCATTTGATGATATGATAGAGCTTCATGCTAAACCATGCTTATCAGAACGTAATGGAGATAAGCCTTCTCATAACAGAACCCCTCCTAAACAACGTGAAAAAGACATAAAAGGAATGCTAAAAAAGGATGAAAATTCTGGTTTAGGATCAAGAGGCATTGAGACACCAACTAGGGCAACACCAAATAGTCACAGAACTCAGACAAAGGGTTCTGGCCGAACAAATGAAGTCAAGCAGAAAGATCCTTCCAATATTAAAAAAGGTTTGAATCTTTTGAGACTTTCAAGAATAGCAAAATCAAATTTACAAAAAGAAAATGAGAAAGAAAACTATCGTCGCCCTTTGCCCAATGGCTCTGAGAAGGATGCAGATGTTAAAATTGAGAACACTGACATGGAACTCGATTTTAATGAGAATAGTGAAGAGGATACACTTGAAGAAACTGATGGTTCTGAACACACACCTGTGCCCAATGAGAAAATGGAGAATAACTTTCAGAATCAGGGAAAAGCAGAGGACACTGAAAATGTTATACACCAGTTGGACACCTTATCTGTGACTACTCCTGCCTCAAACGATTCAAGGCCATTCGATCACGAGTCAACTCCTGACCGTTCTGACATATCTTCTATTTCTCCAAGTGTAAGCCCTCTAGTGAAAAAAAGGCCAAAAGAAGATTTAGGTTCTGGCCTTGACTCTGATTCTTCAAGATCATCAAGCGACAATTCCCAGGTTATTTGGCATCCATCTGATCTCTCAGTCAGACCTGTAATGCCCAGCAGAAAAGTTGACAAAGGCTCGGAAGTCATCCCTTCACTTCCTTTTGAGGCATTGCAAGCACCTGATTTTGTCAAAATGCCTAAAGAGCAATTAGAGGCTGTACATAACCGAATTATAGCCATCTTGAGCGGGAATACTAGCATTGGAGAAAAACAAAATGTGGTTAGGTACCTCGAGATGTTGAGCAGTAATGCTGATGCAGCCAATATCTTGACCAATGGGCCAATAATGCTCATTCTCATAAAATTGCTACGTCAATCTAAGGCATCAGCTTTACGTGTTCAACTTGCTTCACTGATTGGTCTGTTGATTAGACACTCTACCTTTGTTGATGACAGTTTGGCTAATTCTGGAATTCTAGGTTCACTGACGGATGGCCTTAGGGACAGACAGGAAAAAGTAAGAAGGTTTTCTATGGCTGCTTTGGGTGAGTTGCTATTTTATATATCCACCCAAAGTGCTGACTCTAAAGATAACACTCTGCTTGAATCTCCATCGAAGGACAATAGGACCACACATGGCTGGCAGGTTCCAAATTCATTAATCTCCCTTGTGTCAGCGATATTGAGAAAAGGTGAGGATGATATAACTCAATTGTATGCATTGAGAACAGTTGAGAATATTTGCAGCCAAGGAGGGGTCTGGGTGGGACGTTTCACCAGTCAAGATGTTATTAATAATCTCTGCTATATCTATAGAGCGGCAGGGAAGCAGGAAAGCATGAGGCTTACTGCAGGATCATGTTTAGTACGCTTAGTTCGCTTTAATCCTTCTAGCATTCAGTCTGTTATAGAGAAACTCTCATTCAAGGATCTAGCTTCTGCTCTTGTCAAAGGGAGTCCACGAGAGCAGCAAATTAGCTTAAATCTTCTTAACTCAGCAATGCTTGGAAGTCATATGCTCACAAATGTTGGAAGATACCTTATACAACTTTCAGAGGATAAGAATCTGATCCCAAGTCTTCTGTCCCTTGTTGAGCAGGGTAGTGAAGTTTTAAAAGGAAAGGCACTTGTTTTTGTGGCTCTCCTCTGCAAGCACGGTAGAAGGTGGCTTCCACAGTTCTTTTGCAGCCATAAGTTACTGTCAGTGGTGGATAGGCTGGGAAAAGAGAAGGATGCCTTTGTGCGGCAGTGTTTAGTTGCATTTCTGCATATTGTGGCATCTACCATTCCAGGTTTACTGGATATAATAACAGGGGATATCCAGCAAATGATGGGAGGAAGGCGCCATGGACATATCTCTTCCCTTACCGGCAGATCTGCTCCAAAAGCCAATATTAATTTGTTTCCTGTTGTCCTTCATCTTCTTGAAAGTTCTGCTTTTAAGCATAAAGTGGCGACACTTCCAGTACTACGGCAGTTGGCGAATCTCATTAAACTTGCAGAGGCACCGTTTCAGGGAAGAGATGACTTTCAAATAACCCTTCTCCGAATTTTAGAGTCTCTCACGGAGGAATCTTCTGTGATCCTTACCAATCCTGACATTTTCATTCCTGAAATCCTCCCTAGTTTAACAGTTCTCTACAAGGGTAACAAGGATGGTGATGCAAGATTTTTGTGCCTTAAAATCTTTTTTGATGTGATGATTATTCTCTTGAGTGAACCAATTGAAGAAGAGCAAAGATTGAACGATCTGAAGTTTGTATCAAATACACATTTTCTTCCTCTCTACCCAACCTTGATCGAAGATGAAGATCCGATTCCTATCTTTGCACAGAAGCTTCTTGTCATGTTATTAGAGTTCAGTTTTATTTCAATTCCAGACATTCTACACCTGAAGACAATATCACAATGTTTTGAGTTCTTGCTTGGTGATCTGTCAAATGCAAATGTGAATAATGTTAAGCTGTGTCTTGCTCTGGCTTCTGCTCCTGAAATGGAGTCAAAGTTACTCTCCCAATTGAAAGTTGTTAGGAGGATTGGTAATTTTCTTGAGTTTGTATGTGCAAAGGGAATGGAAGATTTGCTGGAACCAACTCTTGGGCTGTGTAGGGCCTTTCTAGCACGTTCAGTCAGCTTTACAAAAGGCTTCAGACACACAACAGAACCAACTCTCTTAGGTGACTGTCCTCCTGAAGTGAGTGGACCGGTTGACCCCCAGCAATGCATAAGAGATATAACAGACTTTGGAAACAATGTTGGTGTCTTCCTAGAGTTGAGCGCATCTAGGGAAACCAGTATTGCCGATATAGCTTCTGAATGCGTGATTTTACTGCTCAAGGCCGCTCCTAGAGAAGCCACAACTGGTCTACTAACCAATCTCCCCAAGGTCACCGTGATCCTAGAATCCTGGAGTAAAGGCATCCCTCATTTAACGGTTCAGAGAATGCTTCATGCTTTAGGTTATGCTTGCAAGCAGTACTTATTGCACGCAATGATATTATCAATATCAATACCAGAGATTTCAAGAATTGAAGGAATAGTTTCTGAACTCAAGAGTTCAAGTGTCCCTGCTTTAGCCAAAACTGCTGGATTGGCAGCCTTGGAGTTGCAGCGGCTACCTCGCTGCATTTGA 4020 0.4149 MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKNKVLQEVRILHTLDHQNVLKFYSWYETSAHLWLVLEYCVGGDLLSILRQDIQLPEESVNELACDLVRALQYLHSNGIIYCDLKPSNILLDENGRTKLCDFGLARKLKEISKVPSSSLPQAKRGTPSYMAPELFEDGGVHSYASDFWALDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELCGHAFWKTKFSLVSLPSQPAFDDMIELHAKPCLSERNGDKPSHNRTPPKQREKDIKGMLKKDENSGLGSRGIETPTRATPNSHRTQTKGSGRTNEVKQKDPSNIKKGLNLLRLSRIAKSNLQKENEKENYRRPLPNGSEKDADVKIENTDMELDFNENSEEDTLEETDGSEHTPVPNEKMENNFQNQGKAEDTENVIHQLDTLSVTTPASNDSRPFDHESTPDRSDISSISPSVSPLVKKRPKEDLGSGLDSDSSRSSSDNSQVIWHPSDLSVRPVMPSRKVDKGSEVIPSLPFEALQAPDFVKMPKEQLEAVHNRIIAILSGNTSIGEKQNVVRYLEMLSSNADAANILTNGPIMLILIKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLANSGILGSLTDGLRDRQEKVRRFSMAALGELLFYISTQSADSKDNTLLESPSKDNRTTHGWQVPNSLISLVSAILRKGEDDITQLYALRTVENICSQGGVWVGRFTSQDVINNLCYIYRAAGKQESMRLTAGSCLVRLVRFNPSSIQSVIEKLSFKDLASALVKGSPREQQISLNLLNSAMLGSHMLTNVGRYLIQLSEDKNLIPSLLSLVEQGSEVLKGKALVFVALLCKHGRRWLPQFFCSHKLLSVVDRLGKEKDAFVRQCLVAFLHIVASTIPGLLDIITGDIQQMMGGRRHGHISSLTGRSAPKANINLFPVVLHLLESSAFKHKVATLPVLRQLANLIKLAEAPFQGRDDFQITLLRILESLTEESSVILTNPDIFIPEILPSLTVLYKGNKDGDARFLCLKIFFDVMIILLSEPIEEEQRLNDLKFVSNTHFLPLYPTLIEDEDPIPIFAQKLLVMLLEFSFISIPDILHLKTISQCFEFLLGDLSNANVNNVKLCLALASAPEMESKLLSQLKVVRRIGNFLEFVCAKGMEDLLEPTLGLCRAFLARSVSFTKGFRHTTEPTLLGDCPPEVSGPVDPQQCIRDITDFGNNVGVFLELSASRETSIADIASECVILLLKAAPREATTGLLTNLPKVTVILESWSKGIPHLTVQRMLHALGYACKQYLLHAMILSISIPEISRIEGIVSELKSSSVPALAKTAGLAALELQRLPRCI 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10081 1339 MobiDBLite consensus disorder prediction 342 375 - -
Vifa1g10081 1339 Gene3D Transferase(Phosphotransferase) domain 1 1 282 - -
Vifa1g10081 1339 MobiDBLite consensus disorder prediction 376 390 - -
Vifa1g10081 1339 MobiDBLite consensus disorder prediction 474 491 - -
Vifa1g10081 1339 SMART serkin_6 4 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10081 1339 Pfam Protein kinase domain 4 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10081 1339 Gene3D - 526 890 IPR011989 -
Vifa1g10081 1339 MobiDBLite consensus disorder prediction 255 405 - -
Vifa1g10081 1339 MobiDBLite consensus disorder prediction 292 315 - -
Vifa1g10081 1339 FunFam Aurora kinase A 1 81 - -
Vifa1g10081 1339 SUPERFAMILY Protein kinase-like (PK-like) 1 230 IPR011009 -
Vifa1g10081 1339 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 188 IPR044591 GO:0000911|GO:0000914|GO:0008017
Vifa1g10081 1339 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vifa1g10081 1339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Vifa1g10081 1339 MobiDBLite consensus disorder prediction 255 290 - -
Vifa1g10081 1339 SUPERFAMILY ARM repeat 526 1110 IPR016024 -
Vifa1g10081 1339 ProSiteProfiles Protein kinase domain profile. 4 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10081 1339 MobiDBLite consensus disorder prediction 427 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10081 Vifa-Chr1 1665209995 1665216578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10081 2 230 MAP Kinase Kinase Kinase AT3G13530 30.682 6.03e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Vifa1g10081 Pkinase 4.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10081 K17545 - gmx:100777288 2252.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10081 1 1665209995 1665216578 Vifa1g10081 1 1665209995 1665216578 ECH