Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10080 ATGGAACCCCAACCTCAACCAATTTCACCTCCGATGGACGCTCCCGACGATCTCTCCTCCGTTTGGGACCTTAGCTACCTCCTCGACTTCAATCTCGACGACGACGCCTCACTTCCCTTAAACCTCCACAACGAACCTCCACTCCCCCCTCCAATTCCAAACCCTAATCCTCCGGAGAATGACAAGATCCGAAAGCGTGACCCGAGACTTACTTGCTCCAACTTTCTCGCGGGTCATGTACCTTGTGCATGCCCCGAACTCGATGCGCTGCTTGAAGATAACGGTTTACCAGGCAAGAAACGCGCTCGAGCTGTACGTGCGTCTGCATCGGCGCGTTGTCAGGTTCCTGGTTGTGAAGTTGATATCTCCGAACTTAAAGGCTATCATCGACGTCATAGGGTTTGTTTGCGATGCGCTAATGCTGTTACTGTTCTTATTGATGGTGAGGCGAAAAGATACTGTCAGCAGTGTGGAAAGTTTCATGTTTTACCGGATTTTGACGAAGGGAAAAGGAGCTGTAGAAGGAAATTGGAGCGTCATAATACTAGGAGGCGGAGAAAGCCTGCAGATTCTGTAGTAGCAGCTGATCATGAAGTTCAAACTGTTACTCAGAATGATGATTCCAATTGTGATGGAGAAGCAGGCTTAGATTATTCGAATTTCAGTAGTGAAAATGTTGAAAAAAGAGTGTCTCTGGATCATGAAGAAGAACCGGTTATTGTTGGGTCCTCAACTCCAGAGACCCAGAATGTTAATGGGGAGAGTGGTGTGTCGTTTGTTGCTTCTGCTGAAACCCAAGCTAATATTGGAAATGATGTTTCCAATCTTTCCAAATCGCCTTCATATGGTGACAATAAGAATGATTATTCATCTATGTGCCAAACAGGTCGGGTTTCTTTTAAGCTTTACGATTGGAATCCTGCAGAGTTTCCTAGAAGGCTACGGCTCCAAATATTTCAATGGTTGTCAAGTATGCCTGTGGAGCTAGAGGGATATATCCGCCCTGGGTGTACAATCCTGACAATATTTATTGCAATGCCAAATATCATGTGGATAAATTTACTCAAAGACCCTATGTATTATGTGCGTGATCTTGTTGCTCCCAAAAAGATGCTATTTGGAAGAGGCACCGCTCTAATTCATCTGAATGACACGATCTTCCGTGTTATGAAAGATGGAAGTTCTGTGACAAAAGTCGAGGTAAACATGCATGCACCTAAGCTTCATTACATTCACCCCACATGCTTTGAAGCAGGAAAACCCATGGAATTTTTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCATTTTATGGAAAGTATATGAAGTACGAGTATTGCGTTCCGTCTCCACATAACTGGAGTGAAGACAGTATTTCTTGTGCTTTTGACAATCAGTTATATAAGATATGTGTCCCTCATATTGAGGAAAATCTCATGGGCCCTGCATTTATTGAGGTTGAGAATGAGTCTGGTTTATCAAACTTTATTCCTGTACTTATTGGGGATAAAGAAATTTGCACTGAAATGAAGATGTTGCAACAAAAGCAAGATGTATCTCTCCTTTCAAAACAATTTCGGTCGGCATCTGTTGGTTCTATTTGTAGCTCATGCAAAGCTTTTGTACATATTCATACATCATCATCAGACTTGCTTGTAGATATAGCATGGTTACTTAAGGATCCTACTTCAGAATTTTTTGACAGAATGCTTCTGAAGTGCATGCATAATGCCAGAGATGCTATTTGTCAGAAAGGTGAAAGTATAGTTTGGAACTCCAAAAGGGAAGGCTTTAAACCTGCCCAGTGCTGTTCTCAAGACGACAAGTTATCAGTTGATGAAGTTAATAGTCAGGGTATCCGGTTTAATGCAGATCCAGAGTTGGGAGTTCTGAGAAGTCTTGCTTTTGATAAAAAAAACCATAAGGTACCACTTTTGAAAAGGGATATTATTATGAATATGGAAGACTTGCCTAATAGACGTGATCATCGAAATCTTACCCGGGGATTCTTGACATCTCGACCGACTATTTTTGTACTTGTTTCGGTTGTTGTTTGTCTAGCTGTATGTGTATCCATCTTTCATCGTGGAAGGGTTACAGAGTTAGCAGTATCCATTAGAAGGTGTTTGTACCATTAG 2154 0.4215 MEPQPQPISPPMDAPDDLSSVWDLSYLLDFNLDDDASLPLNLHNEPPLPPPIPNPNPPENDKIRKRDPRLTCSNFLAGHVPCACPELDALLEDNGLPGKKRARAVRASASARCQVPGCEVDISELKGYHRRHRVCLRCANAVTVLIDGEAKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNTRRRRKPADSVVAADHEVQTVTQNDDSNCDGEAGLDYSNFSSENVEKRVSLDHEEEPVIVGSSTPETQNVNGESGVSFVASAETQANIGNDVSNLSKSPSYGDNKNDYSSMCQTGRVSFKLYDWNPAEFPRRLRLQIFQWLSSMPVELEGYIRPGCTILTIFIAMPNIMWINLLKDPMYYVRDLVAPKKMLFGRGTALIHLNDTIFRVMKDGSSVTKVEVNMHAPKLHYIHPTCFEAGKPMEFFACGSNLLQPKFRLLVSFYGKYMKYEYCVPSPHNWSEDSISCAFDNQLYKICVPHIEENLMGPAFIEVENESGLSNFIPVLIGDKEICTEMKMLQQKQDVSLLSKQFRSASVGSICSSCKAFVHIHTSSSDLLVDIAWLLKDPTSEFFDRMLLKCMHNARDAICQKGESIVWNSKREGFKPAQCCSQDDKLSVDEVNSQGIRFNADPELGVLRSLAFDKKNHKVPLLKRDIIMNMEDLPNRRDHRNLTRGFLTSRPTIFVLVSVVVCLAVCVSIFHRGRVTELAVSIRRCLYH 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10080 717 MobiDBLite consensus disorder prediction 43 58 - -
Vifa1g10080 717 ProSiteProfiles Zinc finger SBP-type profile. 110 187 IPR004333 GO:0003677
Vifa1g10080 717 SUPERFAMILY SBT domain 111 192 IPR036893 GO:0003677|GO:0005634
Vifa1g10080 717 MobiDBLite consensus disorder prediction 38 65 - -
Vifa1g10080 717 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 76 521 IPR044817 GO:0003677
Vifa1g10080 717 Gene3D - 108 174 IPR036893 GO:0003677|GO:0005634
Vifa1g10080 717 Pfam SBP domain 113 187 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10080 Vifa-Chr1 1664344630 1664354754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10080 8 712 SBP-box Gene Family AT5G18830 44.289 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa1g10080 SBP 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10080 - - gmx:100776034 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10080 1 1664344630 1664354754 Vifa1g10080 1 1664344630 1664354754 ECH