Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10073 ATGAGCGATGAACCACGAGAACCACCTCAACCTTCCTTGAGTAATGAGGGCCACAAGTCAGATAGAAAACAAATAGATAAAAAGGAGAGTCCATCTGTAAGAAGCAGACGACCCCGACCGGGATTTTCTGATTCGTTTTCTAGTATTGACTTGGCATCTTTAGAGATTGAGGAAGGAAACCAATCTGAGTATTCTCCTAGAAGTCAAGAATCTGATACACCAAGTTCAAGGGCAAGCACTTCTGATTCTGAGGGAGGTTTAAGAGGCAATCTTAATAATAATCAGTGGCGCGGTTTCTTTAAATTGCTAAAGAAAGGATCACAAATGCCATTTCAAACCTTTCATCCGTTGAAAAATGTTCCAAAACTTACTAGAAGAAAAAGCAAAAGAATTAGGGAGGATCTCATCCCATCTCTGAATTCACCGGCTCTTCAGTCTTCTTTTGATGCCGAGTTTTGCTGCTTCAAATCTTCATGGAAGAATTTTTCTCTCGCTGAGATTCAAGCCGCGACCGATGACTTTAGCCATGATAATTTGATTGGGGAGGGAGGCTATGCTGAGGTATACTTAGGGAAGTTGGAAGATGGAAACTTTGTTGCCATTAAACGGTTGACAAGAGGTTGCCAGGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCATGTGGATCACCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAATTGTCTCCTCATGGAAGCTTGTCATCCATACTTTACGGACCTAGAGAGAAACTGAATTGGAGCCTTAGATTTAAGATTATTTTGGGGACTGCTGAGGGTCTTCGCTATCTGCATGAAGGATGTCAAAGAAGGATTATTCACAAAGATATCAAAGCTTCTAACATTCTTCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGGCTCGCGAAGTGGTTACCTGATCAATGGACTCACCATACCGTCTCCAAAGTGGAAGGCACATTTGGCTATCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACTGATGTATATGCTTATGGTGTGCTATTATTGGAGCTCATTACCGGGCGACAAGCTTTGGATAGTTCACAAAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTATCTAGTAATAACATCAAAGAGCTCGTTGATCCAATTTTAGGCGATGCTTATGATGAAGAACAGATGAAACTTGTAGTCTTAAATGCTTCTATGTGTATAGACCAGTCCTCAATACAACGACCGCAAATGAGTCAGGTCTTACGGATACTAAGAGGAGAAGAAGAGAGCTTGAAAATGTTGAAAGAAAGACAGAAGTCTAAACTTCATAGAACATACTCTGAAGAACTATATGATGCAGAAGACTATAACTCGACAAAGTTTTTGAGCGACCGTGATCGACATATGGAGACTATTTTAGGCACCAGCAATCCAAATTAG 1485 0.4061 MSDEPREPPQPSLSNEGHKSDRKQIDKKESPSVRSRRPRPGFSDSFSSIDLASLEIEEGNQSEYSPRSQESDTPSSRASTSDSEGGLRGNLNNNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDAEFCCFKSSWKNFSLAEIQAATDDFSHDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGCQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRFKIILGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSSNNIKELVDPILGDAYDEEQMKLVVLNASMCIDQSSIQRPQMSQVLRILRGEEESLKMLKERQKSKLHRTYSEELYDAEDYNSTKFLSDRDRHMETILGTSNPN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10073 494 PANTHER OS08G0249100 PROTEIN 55 479 IPR046958 -
Vifa1g10073 494 Pfam Protein tyrosine and serine/threonine kinase 177 384 IPR001245 GO:0004672|GO:0006468
Vifa1g10073 494 Gene3D Transferase(Phosphotransferase) domain 1 251 467 - -
Vifa1g10073 494 ProSiteProfiles Protein kinase domain profile. 174 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10073 494 SMART serkin_6 174 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10073 494 Gene3D Phosphorylase Kinase; domain 1 139 248 - -
Vifa1g10073 494 SUPERFAMILY Protein kinase-like (PK-like) 159 464 IPR011009 -
Vifa1g10073 494 MobiDBLite consensus disorder prediction 1 92 - -
Vifa1g10073 494 MobiDBLite consensus disorder prediction 16 35 - -
Vifa1g10073 494 ProSitePatterns Protein kinases ATP-binding region signature. 180 202 IPR017441 GO:0005524
Vifa1g10073 494 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 251 453 - -
Vifa1g10073 494 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 144 248 - -
Vifa1g10073 494 MobiDBLite consensus disorder prediction 46 92 - -
Vifa1g10073 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10073 Vifa-Chr1 1663118677 1663121387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10073 144 476 Trihelix Transcription Factor Family AT5G38560 39.718 2.71e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vifa1g10073 PK_Tyr_Ser-Thr 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10073 - - lja:Lj6g3v1915960.1 837.41