Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10069 ATGATCAAACATGGATTGTTTGATGGTCTTCTTGGTTTCTCACAGGGGGCGATATTATCAGGTGCACTGCCGGGTCTTCAGGAGAAGGGTGTGGCACTAAGAAAAGTTCCGAAAGTGAAATTTCTTATAATAATAGGAGGGGCTAAGTTTTTGGAACCTTCAGTGGTAGAGAAAGCATATTCTTCAAAAATTGGTTGTCCCTCTCTTCATTTTATAGTTGTCGTATTTTGTTCAATTCATCGAGAAATTGACCAGAACACGAAGAAAATTATTACAAATTCTTTTGCGATTCATCAAATGACAAATGGAAATAGAAAAAAGGCTACATGGCTTCATCCCAATACAAGGCAACAACATAACTCTAATGATTGTGGATACTATGTGATGAAAAATATGTTGGATATTGTCTCTGACAATATAACCGAGAATTGGATGCAGGTATTTGATGACCCAACAGAATTAACACAAGATGATTTGTATGATTTGCGACTCCGTTGGGAAAAATGTTTCTTTGAGTTATATAAAAATTAA 531 0.3559 MIKHGLFDGLLGFSQGAILSGALPGLQEKGVALRKVPKVKFLIIIGGAKFLEPSVVEKAYSSKIGCPSLHFIVVVFCSIHREIDQNTKKIITNSFAIHQMTNGNRKKATWLHPNTRQQHNSNDCGYYVMKNMLDIVSDNITENWMQVFDDPTELTQDDLYDLRLRWEKCFFELYKN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10069 176 Pfam Ulp1 protease family, C-terminal catalytic domain 109 168 IPR003653 GO:0006508|GO:0008234
Vifa1g10069 176 Gene3D alpha/beta hydrolase 1 73 IPR029058 -
Vifa1g10069 176 PANTHER OVARIAN CANCER GENE-2 PROTEIN-RELATED 1 73 - -
Vifa1g10069 176 Pfam Serine hydrolase (FSH1) 2 72 IPR005645 -
Vifa1g10069 176 Gene3D - 79 176 - -
Vifa1g10069 176 SUPERFAMILY Cysteine proteinases 69 175 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10069 Vifa-Chr1 1662554038 1662555623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10069 3 70 Sulfurtransferasese or Rhodanese AT1G09280 36.765 4.62e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10069 - - tpra:123896914 146.747