Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10064 ATGGCATCATTGGTTGCCAGTGGGAGCAGTCAAGTGTCTTCTTCAGTTTCTGTTCAAGAAAAAGGAAGTAGGAATAAGAGAAAATTCAGGGCTGATCCACCTTTAGGAGATCCAAATAAGGTTATACCTTCACTTCAGCATGAGGGCCTCAGTTATGAATTCTCTGCTGAAAAAGTTGAAATGACCCCATGTTTTGGGCAAGTCACAGCGGCTGACTTGTGCAGTGGTAGCCAAGATTGTTCTGATGGCTTGAAGCTTGACCTTGGATTATCTAGCCCTGCAATTTCATCCGAGGTTAGGCATAGCCTTCATAAGGATGATCTAGAGGCGGTTGAATCCCATGGGGTTGATTGGAGTGATCACACAGAAACTCAGTTGGAAGAACTTCTCCTGAGCAATTTGCATACCATTTTCAAGAGTGCAATAAAAAAAATTGTTGCTTGTGGCTACACTGAAGATGTTGCTACTAAGGCTATGTTAAGGCCTGGCATCTGTTATGGATGCAAAGATACAGTATCTAATATAGTTGATAACACATTGAATTTTCTAAGAAACGGCCAAGAGTTTGATCCTTCACGAGAGCACTATTTTGAAGATTTAATGCAGCTTCAGAAGTATATCTTGGCTGAATTGGTTTGTGTTCTTCGAGAGGTTAGGCCATTTTTCAGTGTTGGTGATGCAATGTGGTGTTTGTTAATTTGTGACATGAACGTGTCCTATGCTTGTGCAATGGATGGCGACCCTCTAAGTGGTTTGTACAGTGATGGCATTGGTGATGGCTGTTCTTCTGTCCAGACTGAATCTCAATCGAAAGTAGAAACCAAAGGTCCAGGATTGAGTCTTCCAAGTCCTTGTAATACAATTCCCCTGGGTTCCCAATCTGGGAAATCCTTTGTGGTGGAAAACTCTCAAGTTCCCGGTGGACTCTTGGAGAAACATGGTGCTAATTCTGGATTTCATCCTGTTGACAAGTCATCTAGTGCTTTTGCAACCTCTCAATCTCACCTGCTACAAGATAAGGGTGGGATTATTAGAAAGGTCCACCCTAGTAGCACCAAGAGGGACTACATATTTCGTCAGAAGTCTATCCATGTGGAAAAAAGTTATCGGACATACGGGTCTAAAGGGTCTTCAAGAGGAGGAAAGCTGAGTGGCTTGAGTGGTTTAATCTTGGATAAAAAACTTAAATCTGTATCAGAATCTACTACCATAAATTTAAAGAGTGCACCCATAAACATAAGCAAGGCAGTGGGAGTTGATGTCACTAAAGACAATCTTAACACTTCTCGCTCATCTAACGATGGACAATCTACCCATACTTCATTTAGTCTGGACTCTAGTGATACTGTTTCTCGTGCAGCCGATCCTTCATCTTCAGAACATGAAGCAAATGCTAAGCCTGCAGTCAGTAGCTCTCCAGATGCATTATCAGCTACAAATACTGATCTTTCTCTTTCACTGTCTTCAAAAAGCAGTTCTTCTAAGACTCCTATCTGCTGCAATCACAAGTTACATGGTGGCAGTTGTGTTGGGATACCTTATGACAAGTCCATGGGACAATGGTTGCCCCAAGATAGAAAGGATGAGCTGATTTTGAAGATGGTTCCGAGGGTTCGTGAGCTACAAAATGAGCTTCAAGAATGGACAGAATGGGCAAATCAAAAGGTGATGCAGGCTGCTCGTCGGTTGAGTAAGGAGAAGGCCGAGCTTAAGGCACTTAGGCAAGAGAAAGAAGAAGTTGAACGACTTAAAAAGGAGAAACAGTGTCTAGAAGAAAACACCATGAAAAAGCTTTTTGAGATGGAAAATGCCTTGGGTAAAGCAGGTGGACAAGTGGACCGAGCTAATACTGCAGTACGGAAGCTCGAGATGGAGAATGCTGCATTGAGGAAAGAGATGGAGATTGCTAAGTTACATGCGGCTGAATCAGCTACAAACTTTCAAGATGTTTCTAAGAGGGAAAAGAAGACCCAAATGAAGTTTCAATCATGGGAGAATCAGAAATCGTTGATACAGGAAGAGCTAATGACTGAAAAAAACAAATTGGCACAGATATTGGCGGAATCAAAGCAAGTCGAAGCACAAGCGGAGCAATTCGAGGCTAAACGGCGGCAGGCGGCAAAGAAAACAGAAGAACTTCTCTCACTGGCCAGTTCTTTAAGAAAAGAAAGAGAACAAATTGAGGAGTCAGGCAGAGCCAAGGAGGAGATGATCAAATCGGAAGCCGAGACGGAACTGCGAAGATACAAAGATGACATCCAAAAACTTGAAAAAGAAGTTGCACAAATAAGGCAGAAATCTGACTCTTCAAAAATTGCTGCTCTTAAAAGAGGAATCGATGGAAGCTATGCCGGTAGCTGGAAGGACATGAAAAAGGGAGGAGGTGTGAAACGGGAAAGAGAGTGCGTGATGTGCCTTTCGGAGGAGATGTCTGTTGTATTCCTTCCATGTGCTCATCAAGTTGTTTGCACAAAATGCAATGATCTCCATGAAAAACAAGGTATGCAAGATTGTCCTTCATGTAGGAGCCCCATCAAGGAGCGGATTTCTGTGCGTTATATGCGTACATAA 2571 0.4271 MASLVASGSSQVSSSVSVQEKGSRNKRKFRADPPLGDPNKVIPSLQHEGLSYEFSAEKVEMTPCFGQVTAADLCSGSQDCSDGLKLDLGLSSPAISSEVRHSLHKDDLEAVESHGVDWSDHTETQLEELLLSNLHTIFKSAIKKIVACGYTEDVATKAMLRPGICYGCKDTVSNIVDNTLNFLRNGQEFDPSREHYFEDLMQLQKYILAELVCVLREVRPFFSVGDAMWCLLICDMNVSYACAMDGDPLSGLYSDGIGDGCSSVQTESQSKVETKGPGLSLPSPCNTIPLGSQSGKSFVVENSQVPGGLLEKHGANSGFHPVDKSSSAFATSQSHLLQDKGGIIRKVHPSSTKRDYIFRQKSIHVEKSYRTYGSKGSSRGGKLSGLSGLILDKKLKSVSESTTINLKSAPINISKAVGVDVTKDNLNTSRSSNDGQSTHTSFSLDSSDTVSRAADPSSSEHEANAKPAVSSSPDALSATNTDLSLSLSSKSSSSKTPICCNHKLHGGSCVGIPYDKSMGQWLPQDRKDELILKMVPRVRELQNELQEWTEWANQKVMQAARRLSKEKAELKALRQEKEEVERLKKEKQCLEENTMKKLFEMENALGKAGGQVDRANTAVRKLEMENAALRKEMEIAKLHAAESATNFQDVSKREKKTQMKFQSWENQKSLIQEELMTEKNKLAQILAESKQVEAQAEQFEAKRRQAAKKTEELLSLASSLRKEREQIEESGRAKEEMIKSEAETELRRYKDDIQKLEKEVAQIRQKSDSSKIAALKRGIDGSYAGSWKDMKKGGGVKRERECVMCLSEEMSVVFLPCAHQVVCTKCNDLHEKQGMQDCPSCRSPIKERISVRYMRT 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10064 856 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g10064 856 Coils Coil 553 593 - -
Vifa1g10064 856 Coils Coil 612 639 - -
Vifa1g10064 856 MobiDBLite consensus disorder prediction 1 41 - -
Vifa1g10064 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 853 IPR013083 -
Vifa1g10064 856 PANTHER OS05G0141500 PROTEIN 12 851 IPR046934 -
Vifa1g10064 856 ProSiteProfiles Zinc finger RING-type profile. 802 842 IPR001841 -
Vifa1g10064 856 SUPERFAMILY RING/U-box 796 849 - -
Vifa1g10064 856 Coils Coil 675 730 - -
Vifa1g10064 856 CDD RING-HC_MIP1-like 797 851 - -
Vifa1g10064 856 Coils Coil 732 773 - -
Vifa1g10064 856 MobiDBLite consensus disorder prediction 426 479 - -
Vifa1g10064 856 Pfam Family of unknown function (DUF6592) 133 244 IPR046527 -
Vifa1g10064 856 Pfam Zinc finger, C3HC4 type (RING finger) 799 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10064 Vifa-Chr1 1661259177 1661262302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10064 802 851 C3H Transcription Factor Family AT1G73950 46.000 2.03e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10064 - - gmx:100777140 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10064 1 1661259177 1661262302 Vifa1g10064 1 1661259177 1661262302 ECH