Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10060 ATGGGTTGTGTTCATGGAACGTGTTGTAGTCGTTACCCTGCACCATCAATTGGTGGGTCTAGGGACTATAGAGAGCTTGGTCCACAAAAGAAGCATGTACTTACACAGAGATCACTTCATTTTGTTGATATTCCTTCTCATAATTTCACTGTGGAGTATTCTGTTTTTACTCAGAGAGGTTACTACCCGGACTCACCTGATAAGGAGAATCAAGATTGTTATTGTGTCAAGACTCAATTGCAAGATAACCCTAATGTTCATTTCTTTGGTGTTTTTGATGGACATGGTGAATTTGGTGGGCAGTGTTCTAATTTTGTTAAGAATAGGTTGGTAGAGAAACTGTCAAATGATTCTGCCTTGTTAGAGGATCCTGTTAAGGCTTATAATTCGGCGTTTTTGGATACTAATGATGACTTGCATAAGAATGAGATTGATGATTGTATGAGTGGTACTACGGCGATTACGGTGCTGGTTATAGGGGATACGCTTTATGTTGCGAATGTTGGTGATTCGAGGGCGGTGCTGGCCGTTAAAGATGGGAATAGAATTGTTGCTGAGGATTTGTCTTCTGATCAGACACCGTTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGTGCTAGGGTTTTGAGTGTTGATCAGGTGGAAGGGCATAAGGATCCGGATATTCAGACTTGGGGGGATGAAGAGAGTCAGGGCGATGATCCTCCGCGATTGTGGGTTCAGAATGGGATGATTCCTGGAGCTGCTTTTACAAGGAGTGTAGGGGATAGTTTGGGTGAGACTATTGGGGTTATTGCCGTTCCGGAGGTGTTAACGGTTCAGCTTACGCCTAATCATGTTTTCTTTGTTGTTGCAAGTGATGGTGTATTTGAGTTCCTATCAAGCCAAACTGTTGTTGATATGGCCGCAAGTTATTCAGATCCCCGTGATGCATGTGCTGCCATTGCTGGAGAGTCTTATAAATTATGGTTGGAACATGAAGGTCGAACAGACGATATAACAATTATCATTGTTCAGATCAAAGGCCTGTCTAATTCAGGTACATCTGAATACGGATCAGGAGAGATCAATTTCAGTACTGTAACAAAGGTCAAGAAAGGAAAGGGAACTTCTGGTGTATCTGCTACCAACGGTCTAGATGTTCATCGTGCCATGAGGACTGGTTTACCTGATTCACTGTCCTGTCAACATGTGGTCTCGTCGAGAAGCCAGGCCATAGTGGTTCCTTCGCCCACATGTCAAAGTCCAGTTGAATTGGCTGCTGAAGGTAGAAGGTGCATTATCTTATCAGCTGAAGGACTTCTTCTCTTGGACTTTTAG 1326 0.4329 MGCVHGTCCSRYPAPSIGGSRDYRELGPQKKHVLTQRSLHFVDIPSHNFTVEYSVFTQRGYYPDSPDKENQDCYCVKTQLQDNPNVHFFGVFDGHGEFGGQCSNFVKNRLVEKLSNDSALLEDPVKAYNSAFLDTNDDLHKNEIDDCMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGMIPGAAFTRSVGDSLGETIGVIAVPEVLTVQLTPNHVFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSGTSEYGSGEINFSTVTKVKKGKGTSGVSATNGLDVHRAMRTGLPDSLSCQHVVSSRSQAIVVPSPTCQSPVELAAEGRRCIILSAEGLLLLDF 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10060 441 Pfam Protein phosphatase 2C 79 317 IPR001932 -
Vifa1g10060 441 SUPERFAMILY PP2C-like 40 344 IPR036457 -
Vifa1g10060 441 Gene3D - 39 344 IPR036457 -
Vifa1g10060 441 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 47 344 - -
Vifa1g10060 441 SMART PP2C_4 48 340 IPR001932 -
Vifa1g10060 441 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Vifa1g10060 441 CDD PP2Cc 68 342 IPR001932 -
Vifa1g10060 441 PANTHER PROTEIN PHOSPHATASE 68 341 IPR015655 GO:0004722|GO:0006470
Vifa1g10060 441 ProSiteProfiles PPM-type phosphatase domain profile. 52 342 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10060 Vifa-Chr1 1660137362 1660139896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10060 1 347 PP2C-type Phosphatase Gene Family AT3G06270 72.046 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10060 - - aprc:113872580 716.457