Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10059 ATGGGTTGTGTTCATGGAACGTGTTGTAGTCGTTACCCTGCACCATCAATTGGTGGGTCTAGGGACTATAGAGAGCTTGGTCCACAAAAGAAGCATGTACTTACACAGAGATCACTTCATTTTGTTGATATTCCTTCTCATAATTTCACTGTGGAGTATTCTGTTTTTACTCAGAGAGGTTACTACCCGGACTCACCTGATAAGGAGAATCAAGATTGTTATTGTGTCAAGACTCAATTGCAAGATAACCCTAATGTTCATTTCTTTGGTGTTTTTGATGGACATGGTGAATTTGGTGGGCAGTGTTCTAATTTTGTTAAGAATAGGTTGGTAGAGAAACTGTCAAATGATTCTGCCTTGTTAGAGGATCCTGTTAAGGCTTATAATTCGGCGTTTTTGGATACTAATGATGACTTGCATAAGAATGAGATTGATGATTGTATGAGTGGTACTACGGCGATTACGGTGCTGGTTATAGGGGATACGCTTTATGTTGCGAATGTTGGTGATTCGAGGGCGGTGCTGGCCGTTAAAGATGGGAATAGAATTGTTGCTGAGGATTTGTCTTCTGATCAGACACCGTTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGTGCTAGGGTTTTGAGTGTTGATCAGGTGGAAGGGCATAAGGATCCGGATATTCAGACTTGGGGGGATGAAGAGAGTCAGGGCGATGATCCTCCGCGATTGTGGGTTCAGAATGGGATGATTCCTGGAGCTGCTTTTACAAGGAGTGTAGGGGATAGTTTGGGTGAGACTATTGGGGTTATTGCCGTTCCGGAGGTGTTAACGGTTCAGCTTACGCCTAATCATGTTTTCTTTGTTGTTGCAAGTGATGGTGTATTTGAGTTCCTATCAAGCCAAACTGTTGTTGATATGGCCGCAAGTTATTCAGATCCCCGTGATGCATGTGCTGCCATTGCTGGAGAGTCTTATAAATTATGGTTGGAACATGAAGGTCGAACAGACGATATAACAATTATCATTGTTCAGATCAAAGGCCTGTCTAATTCAGGTACATCTGAATACGGATCAGGAGAGATCAATTTCAGTACTGTAACAAAGGTCAAGAAAGGAAAGGGAACTTCTGGTGTATCTGCTACCAACGGTCTAGATGTTCATCGTGCCATGAGGACTGGTTTACCTGATTCACTGTCCTGTCAACATGTGGTCTCGTCGAGAAGCCAGGCCATAGTGGTTCCTTCGCCCACATGTCAAAGTCCAGTTGAATTGTAA 1266 0.4321 MGCVHGTCCSRYPAPSIGGSRDYRELGPQKKHVLTQRSLHFVDIPSHNFTVEYSVFTQRGYYPDSPDKENQDCYCVKTQLQDNPNVHFFGVFDGHGEFGGQCSNFVKNRLVEKLSNDSALLEDPVKAYNSAFLDTNDDLHKNEIDDCMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGMIPGAAFTRSVGDSLGETIGVIAVPEVLTVQLTPNHVFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSGTSEYGSGEINFSTVTKVKKGKGTSGVSATNGLDVHRAMRTGLPDSLSCQHVVSSRSQAIVVPSPTCQSPVEL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10059 421 Gene3D - 39 344 IPR036457 -
Vifa1g10059 421 SUPERFAMILY PP2C-like 40 344 IPR036457 -
Vifa1g10059 421 SMART PP2C_4 48 340 IPR001932 -
Vifa1g10059 421 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Vifa1g10059 421 CDD PP2Cc 68 342 IPR001932 -
Vifa1g10059 421 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 47 344 - -
Vifa1g10059 421 Pfam Protein phosphatase 2C 79 317 IPR001932 -
Vifa1g10059 421 ProSiteProfiles PPM-type phosphatase domain profile. 52 342 IPR001932 -
Vifa1g10059 421 PANTHER PROTEIN PHOSPHATASE 68 341 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10059 Vifa-Chr1 1660137362 1660139723 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10059 1 347 PP2C-type Phosphatase Gene Family AT3G06270 72.046 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10059 - - aprc:113872580 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10059 1 1660137362 1660139723 Vifa1g10059 1 1660137362 1660139723 ECH