Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10056 ATGCCTTCTTTTGGGTGTGAGCCGGATCATAATGTGTCGTCGTCGATGATTTATGTTTATGCTCGCACAGGTAATGTTGATATGGCTTTGAAATTGTATGATGATGCGAAAAATGAGAAGTGGCCTGTTAGGGCAGTTGCATTCTCTGCTTTGATTAAGATGTATGCTGTATTCAAGAATCTGCATCCACCATCCTGTGCAAAGGAAAGTAGCACATGCATTGGACCAACAGCGGGACAAATGACGTTTCTATTTTCTGGGTTTTGCTTACTCTTGATAGGTGCTGCAGGGATTCGACCGTGTAATTTAGCATTCGGTGTTGATCAATTCAATCCAAAAACAGAATCAGGAAAGAAAGGAATCAACAGTTTCTTCAATTGGTATTATTTCACCTTCACTTTTGCTCAGATGATTTCTTTGTCATTGATTGTGTATGTACAATCAAGTGTGAGCTGGGCAATTGGTCTTGGAATTCCTGCTGCATTGATGTTGTTAGCTTATGTGTTATTTTTCATGGGTGATAAATTTAGCAGCAGCAGGTCTATATGTTCATCTCCGGATCGGTCCATACGCTTGTGCAGAATGGAATTACGGTGGTTTCCCTCTTTTGTATGGTTGTTTCTTGGATTCTACTGGGTAACTGCTGGTGGTCAGAGTTTGACAAGGGTTTCACCTCAGCTTTACTGGCTCTGTATCACATTTCTTGCTTTCGACGTTGCAATTGTTGTGATTTGTGTTACTGCTGCGTGTCTCATTGGAATTGCCGTTTGCTGTTTTCTTCCATGCATACTTGCTATTTTGTATGCAGTGACTGATCAGGAAGGGGCAACCAAGGAAGAGATTGACCTGTTGCCAAAATACAAGTTCAGAATAATAAAGGAACTTAAAAAAGAAGGTGATGCCCAAGAATCATCGAGAGGAGTGATGACGGAATGTGACAGTGGTTCAGCTTCTGAGCATATTATTGCCTTAGAAGATGCAGAATGTTGTATCTGCCTTTCGGCCTATGATGATGAAGCTGAACTTAGAGAACTTCCTTGCAATCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTCATCAATGCCACCTGTCCTCTCTGCAAGTTTAACATTTTGAGCACTGATAACCTCCAAGAAGTTTGA 1149 0.4125 MPSFGCEPDHNVSSSMIYVYARTGNVDMALKLYDDAKNEKWPVRAVAFSALIKMYAVFKNLHPPSCAKESSTCIGPTAGQMTFLFSGFCLLLIGAAGIRPCNLAFGVDQFNPKTESGKKGINSFFNWYYFTFTFAQMISLSLIVYVQSSVSWAIGLGIPAALMLLAYVLFFMGDKFSSSRSICSSPDRSIRLCRMELRWFPSFVWLFLGFYWVTAGGQSLTRVSPQLYWLCITFLAFDVAIVVICVTAACLIGIAVCCFLPCILAILYAVTDQEGATKEEIDLLPKYKFRIIKELKKEGDAQESSRGVMTECDSGSASEHIIALEDAECCICLSAYDDEAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILSTDNLQEV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10056 382 SMART ring_2 329 369 IPR001841 -
Vifa1g10056 382 Pfam Ring finger domain 328 370 IPR001841 -
Vifa1g10056 382 SUPERFAMILY RING/U-box 319 377 - -
Vifa1g10056 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 378 IPR013083 -
Vifa1g10056 382 Gene3D MFS general substrate transporter like domains 43 197 IPR036259 -
Vifa1g10056 382 Pfam POT family 64 180 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vifa1g10056 382 NCBIfam pentatricopeptide repeat 14 41 IPR002885 -
Vifa1g10056 382 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Vifa1g10056 382 PANTHER TARGET OF ERK KINASE MPK-1 201 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10056 Vifa-Chr1 1659946764 1659948897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10056 202 381 C3H Transcription Factor Family AT1G68070 54.645 1.72e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10056 - - tpra:123891576 327.791