Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10048 ATGTCATATGGGGAAATAGGAATAACACTCAATGAATTTCTTGCTCCTCGCTGGCAAAAGATTCAAGAGGGAAACATCACCGTTGGAAGAGAGGTTCTCAAGAGTCGTGGTTTAGACTTTGATAGCAACTTTTTCTGGATATCAATTGCAGCATTACTTGGTTTCGCAGTAGTATTTGATATCCTATTTGTAGTAGCATTAACTTACTTAAAAGAGCCAAAGCAATCTCGAGCTTTAGTTTCTAAAAAGAGGCCGCCTCAACTAAAAGGAGGAGAAAGAAGCAATGAAGTGGAATTAAAAAATAAGTCAGTAGCAGTTGATATTACCCACACATCAAAGGAAGCTCAAAGCACAGGGAAAATGGTCTTGCCCTTTTTTCCACTGTCAATAGCATTTAAGGATGCCCAGTATTTTGTTGACACTCCTCCGGAGATGAAAAAGCATGGTTCGAATGAGAAAATTTTACAATTGCTCTGCGATATCACGGGAGCATTTAGGCCAGGAATCCTTACTGCTTTGATGGGAGTCAGTGGAGCAGGAAAGACAACACTCATGGACGTGCTTTCAGAAAGAAAAACTGGAGGTATCATTGAAGGAGATATAAGAATTGGAGGGTACCCTAAAGTTCAAAAGACATTTGCAAGAGTTTCAGGTTACTGTGAGCAGAACGACATACATTCTCCATATATAACAGTTGAAGAATCTGTTCAATACTCAGCTTGGTTGCGGTTGCCAAGCGAGATTGATTCAGCTACAAAAGGGAAATTTGTTGAAGAAGTCCTTGAAACAATTGAACTTGATGATATAAAGGATAACTTAGTTGGTATCGCTGGTCAAAGTGTCTTATCTACCGAGCAACGTAAAAGGCTAACTATAGCAGTAGAGCTTGTATCCAATCCTTCAATAATTTTTATGGATGAACCTACATCTGGTTTGGATGCCCGAGCTGCTGCTGTAGTTATGGGTGCAGTGAAGAATGTTGTTGGCACTGGTAGGACCACAGTTTGCACCATACATCAGCCAAGCATCGATATATTTGAACCTTTTGATGAGTTGATTCTAATGAAATCAGGAGGCAAGATCATTTATAATGGAATGCTAGGCCATCATTCAAATAGACTGATTGAATATTTTCAGAGTATACCGGGAGTTCCAAAGATCAAGGACAATTATAATCCTGCAACCTGGATGTTGGAAGCTACTTTTGCATCTGTAGAGTATATCTAA 1227 0.3945 MSYGEIGITLNEFLAPRWQKIQEGNITVGREVLKSRGLDFDSNFFWISIAALLGFAVVFDILFVVALTYLKEPKQSRALVSKKRPPQLKGGERSNEVELKNKSVAVDITHTSKEAQSTGKMVLPFFPLSIAFKDAQYFVDTPPEMKKHGSNEKILQLLCDITGAFRPGILTALMGVSGAGKTTLMDVLSERKTGGIIEGDIRIGGYPKVQKTFARVSGYCEQNDIHSPYITVEESVQYSAWLRLPSEIDSATKGKFVEEVLETIELDDIKDNLVGIAGQSVLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMGAVKNVVGTGRTTVCTIHQPSIDIFEPFDELILMKSGGKIIYNGMLGHHSNRLIEYFQSIPGVPKIKDNYNPATWMLEATFASVEYI 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10048 408 Pfam ABC transporter 160 310 IPR003439 GO:0005524
Vifa1g10048 408 Pfam ABC-2 type transporter 339 394 IPR043926 GO:0140359
Vifa1g10048 408 FunFam ABC transporter G family member 34 144 376 - -
Vifa1g10048 408 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 1 406 - -
Vifa1g10048 408 Gene3D - 145 377 IPR027417 -
Vifa1g10048 408 Pfam Plant PDR ABC transporter associated 18 80 IPR013581 -
Vifa1g10048 408 CDD ABCG_PDR_domain2 127 365 IPR034003 -
Vifa1g10048 408 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 130 383 IPR003439 GO:0005524
Vifa1g10048 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 365 IPR027417 -
Vifa1g10048 408 SMART AAA_5 167 359 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10048 Vifa-Chr1 1657288774 1657290917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10048 155 342 Calmodulin-binding Proteins AT2G36910 28.500 3.13e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10048 K08711 - gmx:100779615 685.256