Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10036 ATGGAGCCATGCTCTAGTGTTAAAGACAGGTACATCCGAGCTCACGCTTTATCCCTGAGCCATCTCGGTATTTGCTGTCGATGTCTTGCTACTTATGGTGATGCTGTTAGTGCAGTAAAATATGAAGGAGATGACACAATAATAATGTACAGAGGCAAAAATTACTCTCAACCACCAACAGAGATAATGTCTCCACGAGTCACTCTCTCGAGAAAGAAGGAATATGATAAGTCAAAGTATAGGGATGGCCTCCGAGCTGTGAGGAGATTTATTCCCAAACTTGAGCTACATCTTGAAATTCTTCGAGCACAACTTGATATATTCCTAAACTTTCGGTTTATGGATTATGGTTTCGATTTTTCAGATGATAGCGATTGTGGTTTTTACATGCCAATCTTTGAAATTCATGAATGTTATGATTGTTCACTCACTCCAACTAAAAATATTGGAGTCCCAAACTCTTTGCTTTCTCGATTTGATTTGTTGTTTATTTTGTTGGATCAAATGGATCCTGATATTGATTGCCAAATATCAAAGCACGTTCTGCGCATGCATCAATTTCGTTCTGCCATTAATGGAGGTGAAGCAGCACATGATGGGAGCGCAAAATATGGAAGAGAAGAAGAAGCTAATATTAAAACATATGTCTTGTCAAATATAACAGAATATTGCATGGAAAGAGAAGAAGAAGATATTGTCACAGCATATGCTGAGCTCAAAAATGCAAATTCAAATACGAAGGTTACCAATATAAACACAATTAGCTTGAAGCATATCAATTAG 783 0.3729 MEPCSSVKDRYIRAHALSLSHLGICCRCLATYGDAVSAVKYEGDDTIIMYRGKNYSQPPTEIMSPRVTLSRKKEYDKSKYRDGLRAVRRFIPKLELHLEILRAQLDIFLNFRFMDYGFDFSDDSDCGFYMPIFEIHECYDCSLTPTKNIGVPNSLLSRFDLLFILLDQMDPDIDCQISKHVLRMHQFRSAINGGEAAHDGSAKYGREEEANIKTYVLSNITEYCMEREEEDIVTAYAELKNANSNTKVTNINTISLKHIN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10036 260 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 42 106 IPR040286 -
Vifa1g10036 260 Pfam MCM P-loop domain 134 185 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa1g10036 260 Gene3D - 131 259 IPR027417 -
Vifa1g10036 260 ProSiteProfiles MCM family domain profile. 117 181 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa1g10036 260 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10036 Vifa-Chr1 1655397732 1655400179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10036 117 221 Core DNA Replication Machinery Family AT5G46280 52.381 5.09e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10036 K02541 - gmx:100811545 129.413