Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10033 ATGATGAAGCTCTCATTAGGTCATTCAAATCAGCTAAGTACAATCGAGCTCTCCGCTTTCTTAAGCGCATGGTTGACAGGGGTTATAAACCTGATGCCATTCTCTGCCATTCTCTTCATCATCTTCCTCTCCATCTTTGATATTTCACTTTGTGGGGATCGAGATAAACCTGCTCTAATAACTTACCCAGATGTGGCTCTCAATTATGTTTCTTGTTTTCAGGGTCTGTTGTTTTGTCCAGAAGCAGCTTCTTTGATGCTTCGTAACTTCTGTATTTATCACATTGATGCTCCAGGGCATGAGTTGGGAGCTGATGTGATTTCTTCGGATGAACCGTTGCTTTGTGTGGATGACCTAGCTGATCAGGTTGCAGAAGTGCTTGATTTTTTCGGGCTAAGAGAGGTTATGTGCATGGGTGTAACAGCTGGTGCTTACATCCTCACACTATTTGCTATGAAATACAAAGAACGAGTGCTTGGATTGATTCTTGTTTCACCGATTTGTAAAGGACCTTCATGGACTGAATGGATTTACAATAAGGTCTTGATGAACTTATTGTACTTCTATGGTATGTGCGGTTTACTGAAGGAATGCCTCCTGCAACGTTACTTCAGTAAGGAGCTTAGATGCAGTATTGAGGGATCAGAATCAGAAGTAATACTAACTTGCCGAAGAAATATATTTGTTGCAGGAACAGACACAAGCACGTACACACTAGAATGGGCAATGGCAGAGTTAATGCACAATCCAGAAATCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGTCGAAGAAACAGACATAGCCAAATTACCATACATGCAAGCAGTTATAAAAGAGACGTTTCGTGTACATCCACCAGTTCCGTTATTACTACCTCGCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATGCCATTAACACCGAGTCCAACTCCGACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATGCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATCGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTCATCATCTGATGTTGAAAAGGCGATAAGTTTGGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGCTACCGGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGATCGATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGAAAATGGCGGTGATGACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGGATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACGCTGAAGATGGAATGCAGTTGCAAAGGTGAACTTGCATTGGCTCACCAAGAATGCGCTATCAAGTGGTTCAGTATCAGGGGTAACAAGACATGTGATGTGTGCAAGCAAGAAGTTCAGAATCTCCCTGTCACTCTCTTACGCATCCAAAATGTTCAAACTCAGAATACCGGAGCAAGGTCTCAGCAGGAAGACGACTTCAGGGTTTGGCAGGAGTTACCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGGATACTGTTACTCCGGTTAATTTGATTGGTTATGGGTTGGCGTTTTTGGGGGTTGCGTATTATAATCATTCCAAGTTGCAGGCGCTTAAGGCTTCGGAGACGCAGAAGAAGGCTCTTCAGAATGATGAAGAGGCTGGAAGGTTGTTGGAACAGAGAGACGGAGAAGGGACTGGAAGGAAGATCGACATTCATGAATTTTGTAGAATATTGTAA 2058 0.4232 MMKLSLGHSNQLSTIELSAFLSAWLTGVINLMPFSAILFIIFLSIFDISLCGDRDKPALITYPDVALNYVSCFQGLLFCPEAASLMLRNFCIYHIDAPGHELGADVISSDEPLLCVDDLADQVAEVLDFFGLREVMCMGVTAGAYILTLFAMKYKERVLGLILVSPICKGPSWTEWIYNKVLMNLLYFYGMCGLLKECLLQRYFSKELRCSIEGSESEVILTCRRNIFVAGTDTSTYTLEWAMAELMHNPEIMSKVQNELEQVVGKGIPVEETDIAKLPYMQAVIKETFRVHPPVPLLLPRKAETDVEIGDYIMPLTPSPTPTHKKVNFLVTSRSVDAAPIVDSDSNNLGNLTTRGKSSSARSIMPKLNFPYNRTSSSDVEKAISLAPESPCEKPSVSGSGSVSLSKLFAPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRSQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASAEKDTENGGDDGEDIAEEEAVCRICLIELCEGGETLKMECSCKGELALAHQECAIKWFSIRGNKTCDVCKQEVQNLPVTLLRIQNVQTQNTGARSQQEDDFRVWQELPVLVIVSMLAYFCFLEQLLDTVTPVNLIGYGLAFLGVAYYNHSKLQALKASETQKKALQNDEEAGRLLEQRDGEGTGRKIDIHEFCRIL 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10033 685 PANTHER OS02G0165000 PROTEIN 307 617 - -
Vifa1g10033 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 566 IPR013083 -
Vifa1g10033 685 Gene3D Cytochrome P450 195 321 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g10033 685 PRINTS E-class P450 group I signature 219 236 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g10033 685 PRINTS E-class P450 group I signature 282 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g10033 685 PRINTS E-class P450 group I signature 239 265 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g10033 685 Pfam Cytochrome P450 216 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g10033 685 SUPERFAMILY RING/U-box 507 562 - -
Vifa1g10033 685 Gene3D alpha/beta hydrolase 71 194 IPR029058 -
Vifa1g10033 685 SUPERFAMILY alpha/beta-Hydrolases 83 215 IPR029058 -
Vifa1g10033 685 CDD RING_CH-C4HC3_MARCH 511 559 - -
Vifa1g10033 685 ProSiteProfiles Zinc finger RING-CH-type profile. 503 565 IPR011016 GO:0008270
Vifa1g10033 685 Pfam RING-variant domain 511 558 IPR011016 GO:0008270
Vifa1g10033 685 SUPERFAMILY Cytochrome P450 218 315 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g10033 685 PRINTS P450 superfamily signature 283 294 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g10033 685 PRINTS P450 superfamily signature 230 247 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g10033 685 SMART ringv_2 510 559 IPR011016 GO:0008270
Vifa1g10033 685 Pfam Ndr family 48 227 IPR004142 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10033 Vifa-Chr1 1655021504 1655027312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10033 201 315 Cytochrome P450 AT2G45550 51.261 1.59e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10033 - K18266 cam:101488558 460.299