Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10025 ATGCATCCTGATCAGAGGAAAAAGTCATCGGTGGAGGTAGATTTCTTTACAGAATATGGTGAAGGGAGCAGATACAAAATAGAGGAAGTGATTGGTAAAGGAAGTTACGGCGTTGTTTGCTCCGCGTTTGATACACACACTGGTGAAAAGGTTGCGATAAAGAAAATCAATGACATATTTGAACATGTATCTGACGCTACTCGCATTCTTCGTGAGATTAAGCTTCTTAGACTTTTACGTCATCCGGATATTGTAGAGATCAAACATATTTTGTTGCCTCCTTCAAGAAGGGAATTCAAGGATATATATGTTGTTTTTGAACTCATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATCTAACACCGGAGCATTACCAGTTTTTCCTCTATCAGCTTCTACGAGGTTTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATTTAAAGCCAAAAAACATTTTGGCGAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCCAGAGTAGCTTTTAATGACACACCAACTGCTATATTCTGGACAGATTATGTTGCAACAAGGTGGTATAGGGCTCCCGAGTTGTGTGGATCCTTTTTCTCCAAGTATACACCGGCTATAGACATATGGAGCATTGGCTGCATATTTGCAGAACTTTTAACCGGAAAACCTCTTTTCCCTGGGAAGAATGTTGTTCATCAATTGGATATCATGACTGATTTTCTTGGGACACCATCTCCAGAAGCCATTGCAAGGGTACGAAATGAGAAAGCTCGGAGATACTTGAGCAGCATGCGTAAAAAGAAGCCAGTTCCTTTCGCGCATAAGTTTCCTAATACAGACCCCCTTGCTCTACGGCTGTTAGAAAGAATGCTGGCATTTGAGGCTAAGGACCGGCCTACTGCTGAAGAGGCCCTAGCAGATCCTTATTTTAAAGGCTTGGCCAAGGTCGAGAGAGAACCTTCTGCTCAGCCAGTTACGAAGATGGAATTTGAATTTGAGAGGCGGAGGATAACAAAGGAAGATGTAAGAGAGCTTATATACCGAGAAATATTGGAGTACCATCCGAAGATGTTAAAGGAATTTCTAGAGGGATCAGAGCCAACGGGTTTCATGTATCCAAGTGCTGTAGACCTTTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTATGGAAAGGGGGGAACGGTTGCTCCACCTGAGCGACAACATGCGTCTTCGTTGCCTAGAGCGTGTGTGTTGTATTCTGATAACACGATGCAGAATACGGCTGAGGTTGCAGAGGATCTATCCAAATGTTGCATCAAAGAAGTTGAGAAACCTCCTGTAGATAGGAGTAGTGCTATTCTTCCGATGACCCGGCTTCCTTTACAAACTCCTCAAAACATTCAAGGTCTTGCTGCAAGACCCGGAAAAGTTGTTGGTTCTGCAATGCATTATAACAACTGTGGGGTGGCAGCAGAAACCGAACAACGGAGGGTGGTTAGGAATGCATCTGTTTCGAATCAGTATGCTGCTTCAAGCTATCCGCGAAGAAATCCAAACTATAAAAGCGAGAGGATAGAAGACGATGGGATTGAAGGTTCTAACAGGATGCAGCCAAAGCCTCAATACATAGCAAGGAAAGTTGCTGCTGCTCAAGGCGGAGCAGGTAGCCAGTGGTATTGA 1683 0.4314 MHPDQRKKSSVEVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAFDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIMTDFLGTPSPEAIARVRNEKARRYLSSMRKKKPVPFAHKFPNTDPLALRLLERMLAFEAKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLEGSEPTGFMYPSAVDLFKKQFAYLEEHYGKGGTVAPPERQHASSLPRACVLYSDNTMQNTAEVAEDLSKCCIKEVEKPPVDRSSAILPMTRLPLQTPQNIQGLAARPGKVVGSAMHYNNCGVAAETEQRRVVRNASVSNQYAASSYPRRNPNYKSERIEDDGIEGSNRMQPKPQYIARKVAAAQGGAGSQWY 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10025 560 MobiDBLite consensus disorder prediction 520 534 - -
Vifa1g10025 560 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vifa1g10025 560 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10025 560 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10025 560 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 340 - -
Vifa1g10025 560 FunFam Mitogen-activated protein kinase 111 339 - -
Vifa1g10025 560 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10025 560 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Vifa1g10025 560 MobiDBLite consensus disorder prediction 506 537 - -
Vifa1g10025 560 CDD STKc_TDY_MAPK 24 361 - -
Vifa1g10025 560 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vifa1g10025 560 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vifa1g10025 560 FunFam Mitogen-activated protein kinase 15 119 - -
Vifa1g10025 560 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10025 Vifa-Chr1 1653198670 1653202397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10025 1 560 MAP Kinase Gene Family AT5G19010 80.454 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa1g10025 Pkinase 5.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10025 - - gmx:100814013 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10025 1 1653198670 1653202397 Vifa1g03148 1 492505863 492508625 PCT