Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10010 ATGATTATCCCAGTGGCAGTAACATCATCCTCTGCCTGCAAACAAGAACTGCCTCTAATAAATTTCCAAAAGGGACTCACCAAAATGGAGTCATTATTTCACAATCGAAACAAAGATAAGGTGGTAGTGATAATGGGGGCCACAGGTACTGGAAAGACCAAATTAGCCATAGATTTGGCCAAACATTTTCAACCATCTGAAATTGTTAACTCAGATAAAATACAAGTTTATAAAGGTCTTGACATAACAACAAATAAGGCAACAGAAGAAGAATGTGATGGGGTCCCACATCATCTCTTAGGTTCATTTGATCCTACAACAAATTTCACTGCCAATGATTTTTGTTACCATGCTTGTTCAGCTATTGATTCAATTCTGCAAAAAGATGGATTACCTATTATTGCTGGTGGTTCAAATTCTTATTTAGATGCCTTGGTGAATCATTGTAGTGAATTTAGGTTAAGGTATGAGTGTTGTTTTCTTTGGGTTGATGTTACACTTCCTGTTCTTCATTCTTCACTTCAATCGCGCGTTGATCGCATGATTGAAGCGGGTCAAGTGGATGAAGTTCGTGAGTTTTTTGATCCATCGGGTGTTTATACAAAAGGGATTCGAAGAGCTATTGGAGTACCTGAATTTCATGACTTTCTTATTGCGGAAACAAATTCAACAGATGAGAGAACTAAAATGAAGCTTCTTGAAGCAGCTATTGCTAGGGTTAAGATTAATAATTGCACTCTTGCAAATCGACAACGTCAAAAAATTCAACGGTTAAATGGAATGTGGAAAAGGAATATGTATCGTCTTGATGCAACCGAAACAATTATTAGAAGTGGAACACGTGCTCGTAAGGAAGCATGGGAAGATCACGTGCTCTCAAGGAGTCTTGTGATCCTCTACAATTTCCTTTACGGTGAAACACATGTTCGCTCAAGAAATATTTCACCTAAAAATATAACTAATGTTCTATCCGGACCACAACCGACATTTGCATTGTCAGGTGTTGCGGCGGCAACCCATTAG 1023 0.3832 MIIPVAVTSSSACKQELPLINFQKGLTKMESLFHNRNKDKVVVIMGATGTGKTKLAIDLAKHFQPSEIVNSDKIQVYKGLDITTNKATEEECDGVPHHLLGSFDPTTNFTANDFCYHACSAIDSILQKDGLPIIAGGSNSYLDALVNHCSEFRLRYECCFLWVDVTLPVLHSSLQSRVDRMIEAGQVDEVREFFDPSGVYTKGIRRAIGVPEFHDFLIAETNSTDERTKMKLLEAAIARVKINNCTLANRQRQKIQRLNGMWKRNMYRLDATETIIRSGTRARKEAWEDHVLSRSLVILYNFLYGETHVRSRNISPKNITNVLSGPQPTFALSGVAAATH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10010 340 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 167 266 - -
Vifa1g10010 340 Pfam IPP transferase 75 150 - -
Vifa1g10010 340 Pfam IPP transferase 155 253 - -
Vifa1g10010 340 Gene3D - 38 303 IPR027417 -
Vifa1g10010 340 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 38 302 IPR039657 -
Vifa1g10010 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 183 IPR027417 -
Vifa1g10010 340 FunFam Adenylate isopentenyltransferase 5, chloroplastic 167 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10010 Vifa-Chr1 1646416790 1646417882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10010 155 319 C2H2 Transcription Factor Family AT2G27760 32.461 1.50e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10010 K10760 - gmx:100812928 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10010 1 1646416790 1646417882 Vifa1g10010 1 1646416790 1646417882 ECH
Vifa4g03811 4 1222624368 1222625342 Vifa1g10010 1 1646416790 1646417882 PCT