Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10009 ATGGGTCACGAAACTCTCTTGCTCACTGCCCCTCCTATTACCACACTAGTGAACCACCCACTCTCAGTCTCTGTACCATCTGCTTCAGCAACAGCAACTGCTGCACCACCTACCTCCCTTGCTCCTGGATTTAGGTTTCACCCAATTGATGAGGAACTTGTTATTTATTACCTCAAGCGCAAGTTTGCTGGTAAATCCTTCCAATTTGATGCTATAGCAGAAGTTGATATCTACAAGAGTGAGCCCTGGGACCTGTCAGATAAATCAAGGCTGAAGACCAGGGACCAAGAGTGGTATTTCTTTAGTGCACTGGACAAGAAGTATGGAAATGGGGGCAGAATGAACAGGGCTACCAATAGAGGTTACTGGAAAGCTACCGGAAATGATCGTCCGGTTAAACATGACTTAAGGACTGTAGGATTGAAGAAAACTTTGGTGTTTCATAGTGGCCGAGCTCCTGATGGGAAGAGGACTAATTGGGTTATGCATGAGTACAGACTTGTTGAAGAAGAGATGGAGAGGGATGGGTCTGGACCCTCTCAGCCACAGGATGCATATGTCTTGTGTAGAGTGTTTCACAAAAATAACATAGGACCTCCAAATGGACAACGATATGCTCCTTTTGTTGAAGAAGAGTGGGAGGAAGGATTGGGAACTGAGCCTGTGGGTGGTCCTGTTTATCACCCTCTGCGTATTGAAGGCAACAACGGCGTTTCATGCAGCGAAGAAAGAAGCATTGTTGTGAAGGACACTCATTCCAACAATAAAACTCCACTTGACGTGAACAAGCTACCAATAGAAACTCGAAATCTTCTCGTTGTGTGCAAAAGGGAGAGTATGACCGAGTACCCATCCCCAGAAAAGAATGATTTTAAGCGTATGCATGTGGATAACGAGTACCCACTCCAGATCGAAAACCCAAAGCCCTTACCTCAAATATACAAAAGGCGTCGCCACAACTTGAACTCCAATCATTCCAATGTTTCCGGAGAGTCATTCCCTATCAGTCAGGATCCATGCTCTCCCACAATCACCACTACCACTTCCCATTCAGATCTCAATCATTGTCGACATCTCGATGTTACCATCCGAAGCACCCCACCGCAGTATCGTCGATGA 1119 0.4593 MGHETLLLTAPPITTLVNHPLSVSVPSASATATAAPPTSLAPGFRFHPIDEELVIYYLKRKFAGKSFQFDAIAEVDIYKSEPWDLSDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNRGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEEMERDGSGPSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWEEGLGTEPVGGPVYHPLRIEGNNGVSCSEERSIVVKDTHSNNKTPLDVNKLPIETRNLLVVCKRESMTEYPSPEKNDFKRMHVDNEYPLQIENPKPLPQIYKRRRHNLNSNHSNVSGESFPISQDPCSPTITTTTSHSDLNHCRHLDVTIRSTPPQYRR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10009 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 39 294 - -
Vifa1g10009 372 FunFam Nac domain-containing protein 86 49 197 - -
Vifa1g10009 372 Gene3D NAC domain 49 197 IPR036093 GO:0003677|GO:0006355
Vifa1g10009 372 ProSiteProfiles NAC domain profile. 40 194 IPR003441 GO:0003677|GO:0006355
Vifa1g10009 372 MobiDBLite consensus disorder prediction 322 351 - -
Vifa1g10009 372 Pfam No apical meristem (NAM) protein 42 167 IPR003441 GO:0003677|GO:0006355
Vifa1g10009 372 MobiDBLite consensus disorder prediction 323 351 - -
Vifa1g10009 372 SUPERFAMILY NAC domain 32 195 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10009 Vifa-Chr1 1645208719 1645209837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10009 1 319 NAC Transcription Factor Family AT3G10480 45.521 1.09e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g10009 NAM 1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10009 - - gmx:100808783 503.056