Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10008 ATGATTTGTTCAAGTTTCAAAAATGATATATGTGGGAATTTGTTGATTCAATTTGATTATGAGTCCATGGAATCAAGTACCAATATTGAAGAAGGCGAGGTTGGCGGTATCACCCAACAGATAGGCACAACATACTTTCTTGCTGAGAACATATGTGATAGAACTAAGGAATTGAAAGTTGATGCAACACTAAAAGTTCCAGGTCTACTTGTTATCGATACCCCAGGCCACGAATCATTTAATAATCTGAGGTTTTGGGGTTCAGGTTTATGTGATATTGCAATCTTGGTTGTTGACATTATGCATGGCATAGATCCACAAACTAAAGAGTCACTCGAACTATTAAAAATGAGGAACAAAAAATTCATTTTTGCATTGAATAAGGTTGATAGGATTTATGGTTGGAAAAAATTTCGCAATGCTCCAATTCGTAAAGCAATATTGCAGCAGACTAAGGATGTTCAAAATGAGTTCAATATGAGGCTCGAACAAATTGTTACCAAGTTCAAGGAACAGGGGCTAAGTACTGCATTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACTAGTGCAATAAGAATCAATGAAATTAAACTTGGGGATAAGGGTTTGCATCGGGTTCCTGTGTTTTGTTTCACTGCTGCGGATTTCGGTGCCAATGTTCAAGAAGGCGAGGTTGGCGGTATCACCCAACAGATATGCGCAACATACTTTCTTGCTGAGAACATACGTGATAGAGCTAAGGAATTGAAAGCTGATGCAACACTGAAAGTTCCAGGTCTACTTGTTATCGATACCCCAGGCCACGAATCATTTAATAATCTGAGGTTTCGGGGTTCAGGTTTATGTGATATTGCAATCTTGGTTGTTGACATTATGCATGGCATAGATCCACATACTAAAGAGTCACTCGAACTATTAAAAATGAGGAACAAAAAATTCATTGTTGCATTGAATAAGGTTGATAGGCTTTATGGCTGGAAAAAATTTCGCAATGCTCCAATTCGTAAAGAAATATTGCAGCAGACTAAGGATGTTCAAAATGAGTTCAATATGAGGCTCGAACAAATTGTTACCAAGTTCAAGGAACAGGGGCTAAGTACTGCATTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACCAGTGCAATAAGGTGCTACAAGTAA 1197 0.3751 MICSSFKNDICGNLLIQFDYESMESSTNIEEGEVGGITQQIGTTYFLAENICDRTKELKVDATLKVPGLLVIDTPGHESFNNLRFWGSGLCDIAILVVDIMHGIDPQTKESLELLKMRNKKFIFALNKVDRIYGWKKFRNAPIRKAILQQTKDVQNEFNMRLEQIVTKFKEQGLSTALYYKNKEMGETFSIVPTSAIRINEIKLGDKGLHRVPVFCFTAADFGANVQEGEVGGITQQICATYFLAENIRDRAKELKADATLKVPGLLVIDTPGHESFNNLRFRGSGLCDIAILVVDIMHGIDPHTKESLELLKMRNKKFIVALNKVDRLYGWKKFRNAPIRKEILQQTKDVQNEFNMRLEQIVTKFKEQGLSTALYYKNKEMGETFSIVPTSAIRCYK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10008 398 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 224 395 IPR015760 -
Vifa1g10008 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 197 IPR027417 -
Vifa1g10008 398 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 226 IPR000795 GO:0003924|GO:0005525
Vifa1g10008 398 Gene3D - 14 210 IPR027417 -
Vifa1g10008 398 Gene3D - 217 397 IPR027417 -
Vifa1g10008 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 395 IPR027417 -
Vifa1g10008 398 PRINTS GTP-binding elongation factor signature 283 294 IPR000795 GO:0003924|GO:0005525
Vifa1g10008 398 PRINTS GTP-binding elongation factor signature 319 328 IPR000795 GO:0003924|GO:0005525
Vifa1g10008 398 PRINTS GTP-binding elongation factor signature 267 277 IPR000795 GO:0003924|GO:0005525
Vifa1g10008 398 Pfam Elongation factor Tu GTP binding domain 28 202 IPR000795 GO:0003924|GO:0005525
Vifa1g10008 398 Pfam Elongation factor Tu GTP binding domain 227 394 IPR000795 GO:0003924|GO:0005525
Vifa1g10008 398 CDD IF2_eIF5B 223 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10008 Vifa-Chr1 1645080811 1645091592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10008 223 394 Eukaryotic Initiation Factors Gene Family AT1G76810 77.326 4.65e-85 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10008 K03243 - vvi:100242745 285.419