Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10004 ATGGGTATTTCGTGGAGCAGTAGTAGAAGAAGAAACAATTTCATCCACAACCCACCTCAACAACCACCCTCACTTCCACCACCACCACCACCTCATTATTATTACTCAACTGAATCACACCCACCACCTCCACCAGCACCTCACCAGCAACAAGGTTATTATTATCCCTCAACCACCACCGGCTATGCCACTCCCCATCATCCTCCTTCTCTTCAACCTCATACCCATTCGTTTTACTTCTCTAACCCTAACGCAAACATCAACTACGCTAATCCTCGTGTTATGGTCCACCCTTCTTACTACGTGAGTCAACATGCCTGGGGTCCACCTCCTCCACCTCCTCCTCCTTTGCCTTCTTCATCCACCCCGCCTCCGTATGTTGATCATCAGACTGCTAAGAAGATTAGGAATCATGTCAATGTTCATAAAGATACTTTGCGCCTTGAAGTTGATGAGCATAACCCTGATCAACATCTCGTTTCGTTTGTTTTCGATGCTGTTTATGATGGCAGCATTACTGTCTCTTACTTTGCGAAGGAAGAAGATAAATGTAGGTTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTGAGAAAGGAGTTGGCCAGAAATTTTCCCAGCCTTCAGGAACAGGGATTGACCTGGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCTTCACCTGGGGAAGATGTCTTTCCTCTTGTAATATGCGCCGAAACTTGTTTGGAAACTCCCTCGGAAAACGAAACTCCTAAAACTCCTGATGATTCCATGCTAAATGCATCCCCTCACATGCAAATAACTCAAGCCGTCTTGGAGAAACGCAATGGTGCTTTCCAGATAAAAGTAGTTAAACAGATTCTGTGGATTGATGGTGTTCGCTATGAGTTGAGAGAGCTATATGGAATAGGAAACTCAGAAGCTGCAGGATTTGATGACAGTGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGATTGTGCGAAAGCTCTGCGACTTCAATCCAATAAATGCCCTATATGCCGTCAGCCCATTGAGGAACTTATGGAGATCAAGGTGAAGAGTGGCAATCCATGA 1143 0.4506 MGISWSSSRRRNNFIHNPPQQPPSLPPPPPPHYYYSTESHPPPPPAPHQQQGYYYPSTTTGYATPHHPPSLQPHTHSFYFSNPNANINYANPRVMVHPSYYVSQHAWGPPPPPPPPLPSSSTPPPYVDHQTAKKIRNHVNVHKDTLRLEVDEHNPDQHLVSFVFDAVYDGSITVSYFAKEEDKCRFVPLFPDAFVPVKVPFEKGVGQKFSQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSENETPKTPDDSMLNASPHMQITQAVLEKRNGAFQIKVVKQILWIDGVRYELRELYGIGNSEAAGFDDSDPGKECVICMTEPKDTAVLPCRHMCMCSDCAKALRLQSNKCPICRQPIEELMEIKVKSGNP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10004 380 PANTHER MAHOGUNIN 1 375 IPR045194 GO:0061630
Vifa1g10004 380 MobiDBLite consensus disorder prediction 106 123 - -
Vifa1g10004 380 CDD mRING-HC-C3HC5_MGRN1-like 323 364 IPR045195 -
Vifa1g10004 380 SMART ring_2 325 363 IPR001841 -
Vifa1g10004 380 MobiDBLite consensus disorder prediction 106 127 - -
Vifa1g10004 380 FunFam probable E3 ubiquitin-protein ligase LOG2 309 374 - -
Vifa1g10004 380 MobiDBLite consensus disorder prediction 51 77 - -
Vifa1g10004 380 PIRSF SBP1_RNase_bind 305 376 IPR017066 -
Vifa1g10004 380 PIRSF SBP1_RNase_bind 38 169 IPR017066 -
Vifa1g10004 380 Pfam Zinc finger, C3HC4 type (RING finger) 323 369 - -
Vifa1g10004 380 MobiDBLite consensus disorder prediction 19 50 - -
Vifa1g10004 380 MobiDBLite consensus disorder prediction 1 77 - -
Vifa1g10004 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 374 IPR013083 -
Vifa1g10004 380 MobiDBLite consensus disorder prediction 1 18 - -
Vifa1g10004 380 ProSiteProfiles Zinc finger RING-type profile. 325 364 IPR001841 -
Vifa1g10004 380 SUPERFAMILY RING/U-box 324 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10004 Vifa-Chr1 1644737996 1644745019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10004 98 379 C3H Transcription Factor Family AT3G06140 60.554 9.22e-113 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10004 - - vra:106775674 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10004 1 1644737996 1644745019 Vifa1g10004 1 1644737996 1644745019 ECH