Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09998 ATGTCTCACATAGCTGTTGAGAGGAACAGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGGTCCTTGACCCCTTGTTTCTATATTAAAAGGGGAGACCAAGCATCAATAATAGGGGGAGTTATAGAATTCATCAATGAATTGCACCAAGTTCTTCAAGCTTTGGAATCTCAAAAGAGAAGGAAGAGTTTAAGCCCTAGCCCTATTCCAAGTCCAAAAACACTGCAACCAACTTTTCATCAATTTGATATCTCCTCTGGAGGAATTGAGACTAACAATACTTTCAAGGAACTAGGAGCAAGCTGCAATTCTTCAGTTGCAGATGTAGAAGTGAAAATCTCAGGTCCAAATGTGATTTTGAGAGTGATATCTCAAAGAATTCCAGGTCAAGTTTCAAGGATTATAGCAGTTTTAGAAAGTTTTTCTTTTGAAGTTCTTCATCTTAATATCAGTAGCATGGAAGAGACTGTTCTATACCAATTTGTAGTCAAGATAGAACTGGGGTGTCAACTGAGTTTGGAGGAACTAGCTATGGAAGTTCAACAAAGCTTTTGTTCAGAGGCTATGAAGTTGATTGCTGTGTGA 588 0.3776 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFINELHQVLQALESQKRRKSLSPSPIPSPKTLQPTFHQFDISSGGIETNNTFKELGASCNSSVADVEVKISGPNVILRVISQRIPGQVSRIIAVLESFSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAMKLIAV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09998 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 70 IPR036638 GO:0046983
Vifa1g09998 195 SMART finulus 4 55 IPR011598 GO:0046983
Vifa1g09998 195 FunFam Transcription factor MUTE 1 66 - -
Vifa1g09998 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Vifa1g09998 195 Gene3D - 1 64 IPR036638 GO:0046983
Vifa1g09998 195 PANTHER TRANSCRIPTION FACTOR FAMA 1 185 IPR044283 GO:0003700|GO:0010052
Vifa1g09998 195 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09998 Vifa-Chr1 1642690813 1642691658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09998 1 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.824 5.41e-84 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g09998 HLH 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09998 - - gmx:100810771 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09998 1 1642690813 1642691658 Vifa1g09998 1 1642690813 1642691658 ECH