Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09983 ATGGCCAGTTTCAGTTCCTTCTCTTCTTCATCTTCCACTCCTCCTCCTCCTCCCTCTTTCTCTTACATTTCAGCTCCGTCTTCTTCAAAACCTTTCCATGATGACTCTGTCGAGGATTCCTGTAGTATTTGCTTAGAGTCCTTCACCGTTCATGACCCTTCCACTGTTACTTGTTGCAAACATGAATATCACCTGCATTGTATTCTTGAATGGTCACAGAGAAGCAAAGAATGCCCAATATGTTGGCAATCACTTTCTTTGAAAGACCCTGCTAGCCAAGAGCTTCTTGTTGCCGTGGAGGCTGAAAAATGCTTAAGATCAAGAAACATTCATTCTTCTTCACTCACTAATTCTTCTGACCCCGTTGAACGTTTTAATGGCGACCATGATGCTTCTCGCTCAGATGATGTTGACTTTGACGAGCAAATTATGCAGCACCTATATGCTGCTGCAAGTAGAGCTCGTTTTGTTCAGAGACAGAGAAGACAAGGATCGTCCGGAGCAGGTCCGTCGGAGTTATCTGGGCTGCAACCAACTCTTACAACTTCACTGACTGGCAGTAGGTCTCCGATCACATCGGCTGCTGACCTTCATCCCGAGGTCGCAAGAAACATAAGCCCTGAGACTGATGTCTCTTACCGACCCAGAGTTCTTTACAGTCCGTCACCACCTCAGGATGGTAGGAAACTAAATACTTCCGAGGTGTTCTCCTTGCCTGAGTCCATCAAATCCAAACTTTCTGCTGCTTCAGCCAAATATAAGGAGTCAATTTCCAAAAGTACCCGTGGACTCAAAGAGAAGTTACTTGCTCGTAATGTGACAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATAGCTGGAGTTTCACGTATGATTGAACGCCTTGAACTTGCATCAAAAAGGTCTAATTCTCCTATCGTTCCGGTGCGTAATGAGGGAATGTCAGGCTTTCAAAATGAAATGAGCGGAGGTGTGGTTCATAATGTTGGTTCAGTTGCTCCCTCACACATTTCTAGCACCGCTGTCGCTGGTCAAATGGAAATTCCTCCATGTGTTCAGAGTGGACATGATGCTGTGAAGATTTAA 1101 0.4532 MASFSSFSSSSSTPPPPPSFSYISAPSSSKPFHDDSVEDSCSICLESFTVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPASQELLVAVEAEKCLRSRNIHSSSLTNSSDPVERFNGDHDASRSDDVDFDEQIMQHLYAAASRARFVQRQRRQGSSGAGPSELSGLQPTLTTSLTGSRSPITSAADLHPEVARNISPETDVSYRPRVLYSPSPPQDGRKLNTSEVFSLPESIKSKLSAASAKYKESISKSTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKRSNSPIVPVRNEGMSGFQNEMSGGVVHNVGSVAPSHISSTAVAGQMEIPPCVQSGHDAVKI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09983 366 SMART ring_2 41 81 IPR001841 -
Vifa1g09983 366 MobiDBLite consensus disorder prediction 158 231 - -
Vifa1g09983 366 MobiDBLite consensus disorder prediction 112 135 - -
Vifa1g09983 366 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Vifa1g09983 366 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g09983 366 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 19 90 - -
Vifa1g09983 366 Pfam Ring finger domain 39 81 IPR001841 -
Vifa1g09983 366 MobiDBLite consensus disorder prediction 158 192 - -
Vifa1g09983 366 SUPERFAMILY RING/U-box 37 88 - -
Vifa1g09983 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 97 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09983 Vifa-Chr1 1638644957 1638647361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09983 35 89 C3H Transcription Factor Family AT4G00335 47.273 1.14e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09983 K19043 - gmx:100785684 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09983 1 1638644957 1638647361 Vifa1g09983 1 1638644957 1638647361 ECH