Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09981 ATGATCTCTTCATCAGTCACCAACTCAAAGCTTTTACTTCCAAGGTCTCAACTTTCAATTCAACCAACCATTCAAAATGTTGAACAAAACATGGGTCTCTCTTTACTTTCTTTCAAAAAACCTCTCTACCTTTCATGCACTCAGAATTTTTCATTGTTAGCAAAACCCAAAACAAAGAATGTGACACAATGTCAAGCCTATGAGGCTGATAGATCAAGGCCATTAGAGATTGACATTGAACTTCCTGGTGAAGAAGCAGCTCAAAAGGTTAAAATAGGATTGTACTTTGCTACTTGGTGGGCTTTGAATGTTGTTTTCAACATATACAACAAGAAAGTTTTGAATGCTTTTCCTTACCCTTGGCTTACTTCCACTTTGTCCTTAGCTGCTGGTTCTCTCATCATGTTAATCTCATGGGCCACTAGGGTTGCTGAGGCCCCAAAAGTTAGTCTGGACTTCTGGAAAGCCCTTTTTCCGGTAGCTGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCAAAGTAGCAGTTTCATTCACTCACATCATCAAGAGTGGAGAACCAGCTTTCAGTGTGCTTGTATCAAGATTCTTGCTTGGAGAAGCATTTCCCATGCAAGTTTACCTTTCATTGTTGCCAATAATTGGTGGTTGTGCACTAGCTGCAGTGACTGAGCTCAATTTCAATATGATTGGATTTATGGGAGCTATGATATCAAATTTGGCATTTGTATTCAGAAATATATTCTCAAAGAAAGGGATGAATGGGATGAGTGTTAGTGGAATGAACTACTATGCGTGTCTTTCTATGTTATCTTTACTAATTCTCACACCTTTCGCCATTGCGGTCGAGGGTCCTAAACTTTGGGCTGCTGGCTGGCAAACAGCCGTGTCTCAGATTGGGCCCAATTTCGTTTGGTGGGTAGTTGCACAGAGTGTGTTGTACCATTTGTATAATCAAGTATCATACATGTCTCTTGATCAGATTTCTCCTTTAACATTTAGCATAGGAAACACAATGAAGAGAATTTCGGTAATAGTCTCTTCCATTCTTATCTTTCACACTCCACTTCAACCTATCAATGCTCTTGGAGCAGCAATTGCGATTCTTGGAACCTTCATCTATTCACAGGCTAAAGAGAAATAA 1155 0.4017 MISSSVTNSKLLLPRSQLSIQPTIQNVEQNMGLSLLSFKKPLYLSCTQNFSLLAKPKTKNVTQCQAYEADRSRPLEIDIELPGEEAAQKVKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLIMLISWATRVAEAPKVSLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPMQVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMNGMSVSGMNYYACLSMLSLLILTPFAIAVEGPKLWAAGWQTAVSQIGPNFVWWVVAQSVLYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSILIFHTPLQPINALGAAIAILGTFIYSQAKEK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09981 384 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 91 383 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vifa1g09981 384 PANTHER SOLUTE CARRIER FAMILY 35 91 382 - -
Vifa1g09981 384 Pfam Triose-phosphate Transporter family 91 379 IPR004853 -
Vifa1g09981 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 132 226 - -
Vifa1g09981 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 282 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09981 Vifa-Chr1 1638127193 1638128926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09981 2 384 Antiporters AT1G61800 76.166 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09981 K15283 K05350 gmx:100804205 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09981 1 1638127193 1638128926 Vifa1g09981 1 1638127193 1638128926 ECH