Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09977 ATGTGCGCTTTAGCAAATATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTCGGTCAAAGCCTCGAGTCATGCTCTTCTCCTACACAAATTGCCGACACTTTAGGAGCAATAGCATCAGCTCTTATGATATATGATAACAAGGCCGAATCTACCAAACCGTCAGATCCTTTGGTGGTTGAAGAGACGTTACTCAAACAATTCAAACCTCGTTTGCCTTTCCTTGTGCTAGAACGGACCATTGAAGCTCTAGCTAGTTTATACGGTAATTCCATACTCACAACTAAACTAGCAAATTCCGATGCAAAACGTTTGCTTGTTGGTTTGATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTATAAAAGCTCTGTTGACTCTGTGCAAAAGTGAAGGCAGTCTATGGCGTGCACTTCAGGGTCGTGAAGGAGTTCAACTATTGATATCTCTTCTCGGCCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCATTGCTTTGCCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCAATTACCGCTGCTGGTGGTATACCTCCGCTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCAGCTAGAATCCTTAAGAATTTGTGCAATCATAGTGAAGACATACGTGCTTGTGTTGAAAGCGCAGATGTTGTTCCTGCATTGTTGTGGCTATTGAAAAATGGAAGTCCTAATGGGAAGGATATTGCAGCAAAGACTATAAATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCATTATTGACTAGTGAACTTCCTGATTCTAAGGTATATATTTTGGATGCTTTGAGAAGTATGCTTTGTGTTGCTCCTCTTAGCGACATTTTACGTGAAGGTAGTGCCTCCGGTGATGCATTTGACACCGTGATAATGTTATTGAGCTCTAACAAGGAAGAGACTCAGGCAAAATCTGCTTCAGCTCTGGCTGAAATTTTCGAAGCAAGGAAAGATTTGCGTGAAAGTAGCATTGCTGTCAGAGCTCTTTGTTCAGCCATGAAGCTGCTCAATGTTGAATCCGAAAGTATCCTAATGGAGTCCTCAAACTGCCTGGCTTCAATATTTCTTTCCATCAAAGAGAACAAGGATGTAGCAGCTCTTGCTAGAGATACATTAACCACCCTAGTTACTCTAGCTAACTCTTCAGTTTTGGAAGTGGCAGAGATGGCTATAGGTGCTGTAGCGAATCTTATTTTGGATACTGAAATAGCAAAAAAAGTTTTTCTAGAAGAAGTTATCTTGCCTGCCACCAGAGTATTACGTGAAGGCACAAATTCTGGAAAAACTCGTGCTGCAGCTGCTATCGCTCGCCTCTTACATTCTCAGAAAGTTGATAATGCTGTTACTGATTGTGTGAATCGCGCCGACACTGTTCTTGCATTAGTTTCCTTTTTGGATTCTTCTGTCAATGAATCTGTTTCCACATCAGAGGCTCTAGAAATTTGGCTATGCAAACGCCCTCTTAATATTCTATATGTTATGATATTTGGAAACAATAGGATTTGGTAA 1572 0.4059 MCALANISGGLSYVISSLGQSLESCSSPTQIADTLGAIASALMIYDNKAESTKPSDPLVVEETLLKQFKPRLPFLVLERTIEALASLYGNSILTTKLANSDAKRLLVGLITMAANEVQDELIKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESADVVPALLWLLKNGSPNGKDIAAKTINHLIHKSDTTTISQLTALLTSELPDSKVYILDALRSMLCVAPLSDILREGSASGDAFDTVIMLLSSNKEETQAKSASALAEIFEARKDLRESSIAVRALCSAMKLLNVESESILMESSNCLASIFLSIKENKDVAALARDTLTTLVTLANSSVLEVAEMAIGAVANLILDTEIAKKVFLEEVILPATRVLREGTNSGKTRAAAAIARLLHSQKVDNAVTDCVNRADTVLALVSFLDSSVNESVSTSEALEIWLCKRPLNILYVMIFGNNRIW 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09977 523 SUPERFAMILY ARM repeat 77 387 IPR016024 -
Vifa1g09977 523 Gene3D - 298 505 IPR011989 -
Vifa1g09977 523 Gene3D - 1 297 IPR011989 -
Vifa1g09977 523 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 227 IPR000225 GO:0005515
Vifa1g09977 523 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 502 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vifa1g09977 523 SMART arm_5 216 256 IPR000225 GO:0005515
Vifa1g09977 523 SMART arm_5 382 420 IPR000225 GO:0005515
Vifa1g09977 523 SMART arm_5 174 214 IPR000225 GO:0005515
Vifa1g09977 523 Pfam Armadillo/beta-catenin-like repeat 174 213 IPR000225 GO:0005515
Vifa1g09977 523 SUPERFAMILY ARM repeat 354 468 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09977 Vifa-Chr1 1637565699 1637567270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09977 147 269 U-box Gene Family AT2G23140 41.129 2.50e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09977 - - cam:101494820 858.981