Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09971 ATGAATTGTTTTTCATGCTGCAAGACAGATGTTGAAACATCGGCTTATAAAAAAGAACGTTCCAAATATGTTTCGAAAGGAAGGAGAACATTCAAATCATTAGCAGCTGCTATGTCACTCAAAACAGGTAGTAGCAGACATAGACAAATTACAGCGGAGATATTAAAATATGGAACCGCGCAAAATGATGTTAAAGTATTAACATATCAAGAAGTGGTTGACGCGACAAATAATTTCAGCTCGGATTGTCTTATCGGAGTAGGTGGATTTGGGAATGTTTATAAAGGATATATCAAAAGCATTGAACAGACGGTAGCTGTGAAGAAATTGAATAGGGATGGGGATCAAGGAACAAGAGAATTTTTCGCCGAGGTTTTGATGTTGAGTATGGTGAAACATCCAAACCTTGTGAGGCTTGTTGGTTATTGTGTAGAAGATGATCAAAGGATTTTAGTTTATGAGCATATGGCTAATGGAAGCTTGGAAAATCACCTTCTAGATATAGGTAATGATAAGGAACCTTTGGATTGGCAAACAAGGATGAAAATCGCGGATGGAGCAGCGAGAGGACTTGAGTACCTGCATAATTCTGCAGATCCACCGATTATTTTCCGCGATTTTAAATCGTCTAATATACTATTAGATGAAAATTTCAATGCAAAGCTTTCTGATTTTGGTCTTGCTAAGATTGCTCCAAGAGAGGGTGAGGGCTTGGTCTCGACTCGGGTTATGGGGACATATGGCTATTGTGCACCAGAGTATGCTGCTACTGGTCAATTATCCTCAAAATCAGATATCTATAGTTTTGGTGTTGTGTTTTTGGAAATTATCTCGGGTAGACGAGTTATCGACCCTGCAAGATCTGCAGAAGAACAAAACTTAATTGATTGGGCACAACCTTTGTTTAAGGACAGGACAAAGTTCACCCTGATGGCTGATCCTTTGCTTAAAGGCCAGTTCCCGGTGAAGGGACTATTTCAAGCTCTAGCAGTGGCAGCAATGTGTCTACAAGAAGAAGCCGATACACGGCCTTATATGGACGATGTCATAACAGCTCTTACGCATTTAGCAGTACACAAGACTGAAGAAAAAGACATAGCTGGTGAATCTCTAAAAATTGCTGGTCATGTTGAATCTTTTAGAGCTGCAAATTCAATTGGATCTGAAAGGGCATAA 1176 0.3963 MNCFSCCKTDVETSAYKKERSKYVSKGRRTFKSLAAAMSLKTGSSRHRQITAEILKYGTAQNDVKVLTYQEVVDATNNFSSDCLIGVGGFGNVYKGYIKSIEQTVAVKKLNRDGDQGTREFFAEVLMLSMVKHPNLVRLVGYCVEDDQRILVYEHMANGSLENHLLDIGNDKEPLDWQTRMKIADGAARGLEYLHNSADPPIIFRDFKSSNILLDENFNAKLSDFGLAKIAPREGEGLVSTRVMGTYGYCAPEYAATGQLSSKSDIYSFGVVFLEIISGRRVIDPARSAEEQNLIDWAQPLFKDRTKFTLMADPLLKGQFPVKGLFQALAVAAMCLQEEADTRPYMDDVITALTHLAVHKTEEKDIAGESLKIAGHVESFRAANSIGSERA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09971 391 CDD STKc_IRAK 85 356 - -
Vifa1g09971 391 Gene3D Phosphorylase Kinase; domain 1 38 155 - -
Vifa1g09971 391 ProSitePatterns Protein kinases ATP-binding region signature. 85 109 IPR017441 GO:0005524
Vifa1g09971 391 FunFam receptor-like protein kinase FERONIA 41 155 - -
Vifa1g09971 391 Gene3D Transferase(Phosphotransferase) domain 1 156 377 - -
Vifa1g09971 391 SUPERFAMILY Protein kinase-like (PK-like) 64 353 IPR011009 -
Vifa1g09971 391 FunFam Serine/threonine-protein kinase PBS1 156 370 - -
Vifa1g09971 391 PANTHER OS07G0668900 PROTEIN 3 364 - -
Vifa1g09971 391 ProSiteProfiles Protein kinase domain profile. 79 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09971 391 Pfam Protein kinase domain 84 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09971 Vifa-Chr1 1636169542 1636171135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09971 1 358 Glycoside Hydrolase AT3G07070 53.867 1.78e-136 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa1g09971 Pkinase 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09971 - - mtr:25486126 654.055