Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09965 ATGATGCAGCCTGGACATGGTATGGCTCCTCCAAGCTTGGGACAACAGCCACCGCAGCAGTACCAGCAGCCGCCACCACAGCAACCCTACGTCATGATGCAACCTCAGGCGCCGCAAGCCGTGTGGGCCCAATCCGCCCAGCCTGCTCAGCAGCCCGCCAGCGCCGACGAGGTCCGTACTCTCTGGATCGGCGATTTACAGTACTGGATGGATGAAAACTACCTTTACACCTGCTTCGGTAACACCGGCGAGGTGACATCTGTGAAAGTGATTAGGAATAAGCAAACTAGTCAATCGGAAGGTTACGGTTTTATTGAGTTTAATACTCGTGCTAATGCTGAGAGAGTGCTTCAGACATACAACGGAACCATTATGCCAAATGGTGGCCAGAGCTTTAGGTTGAATTGGGCTACTTTCAGTGCTGGGGAGAGGTCGTCTAGGCAGGATGAAGGTCCTGATCATACTATATTTGTGGGTGATTTGGCTGCCGATGTTTCTGATTACCTTCTTCAGGAGACTTTTAGGGCTCGATTTAATTCTGTCAAGGGGGCGAAAGTTGTGATTGATAGACTCACTGGGAGATCTAAGGGTTATGGTTTTGTGAGATTTGCTGATGAGGGCGAGCAGATGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCGACAAGACCCATGAGGATTGGACCAGCCACTAATAAGAACCCAGCGGCCACCACTCAGCCCAAAGCCTCATATCAGAACCCTCCAGGAGGACAAAGCGAGAATGATCCTAACAATACAACCATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCACCTTAAGCAAGTTTTCAGCCAATATGGTGAACTAGTTCATGTGAAGATTCCATCTGGCAAGCGATGTGGGTTTGTCCAATTTTCCGACAGGAGCTGTGCTGAAGAAGCTATACGAGTATTAAATGGAACTCTATTGGGTGGTCAAAATGTCCGCCTTTCATGGGGTCGTACTCCCTCAAACAAACAGATTCCCCAAGATCCCAATCAGTGGAGTGCTGCTGCAGGTGGTGGATATTATGGTTATCCTCAGGGTGGTTATGAAAATTACGGTTATGCTGCTGCTCCTGCTGGACAAGATCCCAACGTGTATAGAAGTTATCCGGGTTATGCTGGTTACCAACATCCCCAGCAGCAACAACAGCAAATGGGATATAGCTAA 1206 0.4851 MMQPGHGMAPPSLGQQPPQQYQQPPPQQPYVMMQPQAPQAVWAQSAQPAQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGEVTSVKVIRNKQTSQSEGYGFIEFNTRANAERVLQTYNGTIMPNGGQSFRLNWATFSAGERSSRQDEGPDHTIFVGDLAADVSDYLLQETFRARFNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYQNPPGGQSENDPNNTTIFVGNLDPNVTDDHLKQVFSQYGELVHVKIPSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQIPQDPNQWSAAAGGGYYGYPQGGYENYGYAAAPAGQDPNVYRSYPGYAGYQHPQQQQQQMGYS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09965 401 Gene3D - 238 340 IPR012677 -
Vifa1g09965 401 MobiDBLite consensus disorder prediction 17 31 - -
Vifa1g09965 401 MobiDBLite consensus disorder prediction 387 401 - -
Vifa1g09965 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 139 IPR000504 GO:0003723
Vifa1g09965 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 50 337 - -
Vifa1g09965 401 CDD RRM1_SECp43_like 60 140 - -
Vifa1g09965 401 MobiDBLite consensus disorder prediction 233 261 - -
Vifa1g09965 401 SUPERFAMILY RNA-binding domain, RBD 245 361 IPR035979 GO:0003676
Vifa1g09965 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 126 IPR000504 GO:0003723
Vifa1g09965 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 326 IPR000504 GO:0003723
Vifa1g09965 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 219 IPR000504 GO:0003723
Vifa1g09965 401 SUPERFAMILY RNA-binding domain, RBD 145 241 IPR035979 GO:0003676
Vifa1g09965 401 Gene3D - 153 229 IPR012677 -
Vifa1g09965 401 SUPERFAMILY RNA-binding domain, RBD 22 141 IPR035979 GO:0003676
Vifa1g09965 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 333 IPR000504 GO:0003723
Vifa1g09965 401 Gene3D - 12 150 IPR012677 -
Vifa1g09965 401 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g09965 401 CDD RRM2_SECp43_like 153 232 - -
Vifa1g09965 401 MobiDBLite consensus disorder prediction 226 261 - -
Vifa1g09965 401 FunFam Polyadenylate-binding protein RBP45 10 144 - -
Vifa1g09965 401 FunFam Polyadenylate-binding protein RBP45C 239 369 - -
Vifa1g09965 401 MobiDBLite consensus disorder prediction 382 401 - -
Vifa1g09965 401 FunFam Polyadenylate-binding protein RBP45C 145 238 - -
Vifa1g09965 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 233 IPR000504 GO:0003723
Vifa1g09965 401 SMART rrm1_1 155 229 IPR000504 GO:0003723
Vifa1g09965 401 SMART rrm1_1 60 135 IPR000504 GO:0003723
Vifa1g09965 401 SMART rrm1_1 262 329 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09965 Vifa-Chr1 1634922822 1634925941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09965 61 339 Eukaryotic Initiation Factors Gene Family AT4G34110 25.704 1.10e-24 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09965 1 1634922822 1634925941 Vifa1g09965 1 1634922822 1634925941 ECH
Vifa4g04793 4 1512440085 1512444146 Vifa1g09965 1 1634922822 1634925941 PCT