Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09956 ATGTCGACGGTGTACGTTTTGGAACCGCCGACAAAGGGAAAAGTGGTCGTGAACACCACGCGCGGCCCTATCGACATCGAGCTATGGCCAAAAGAAGCTCCCAAAGCCGTACGAAACTTCGTTCAACTCTGCCTCGAAGGTTACTACGACAACACCATCTTCCACCGCGTAATCAAAGACTTCCTCGTTCAGTGTGGCGATCCCACCGGAACCGGCACCGGAGGTGAGAGTATTTATGGAGATGTTTTTGCTGATGAGTTTCATTCGCGTATTAAATTCAAGCATAGAGGTTTGGTTGCAATGGCTAATTCTGGAACACCTAATTCTAATGGAAGTCAGTTTTTTATTACTCTTGATCGGTGTGATTGGCTTGATCGAAAGCATACCATTTTCGGAAAGGTGACAGGAGATACAATGTATAATCTGTTGAGACTTGGTGAAGTTGAGACTGATAAGAGTGACCGACCTTTAGATCCAGCCCCAAAGATATTATCTGTTGAGGTGTTGTGGAACCCATTTGAAGACATTGTTCCAAGAACACTTCAGAAACCTCAGACTAAAGCTACAAATGATACTGATGGTAAAGATGCAAAGAGGAAAGGTGTAAAAAATTTGAACTTGCTTTCATTTGGGGAAGAAACTGAAGAAGAGGAAAAAGAATTGACATTGGTGAAGAAAAAGATTGTGAGCAGTCATGATGTCTTGAACGATCCTCGTCTTCTAAAGGATGAAAATGCTAATAATGAATTGAGTTCATCTGACAGTAAACTAAAAAGGAATCTGCAGTTATCTGTAAGGGATGCACTTAATTCAAAAAAAGAAGAGCCTCAGAAAGATTCGGGAGCTGATAAATTGTCTCATGTTGATTCCAGTGATGATGATGAGGCAGATTTTGATTCAAGAATGCGCATGCAGATACTCAAAAAGCGGAAGGAACTGGATGATCTCCCGCCCAAACCAAAGATGCAAAATGGAAGGTCGAGGTCCAGTCCAGAGAAACCTACTATGTCAAGAGCTAGGTCCAATTCTGTTAGTGCTGATGAGGAGGATCAACCAAAAGTGGAAAAGTTGTCCATGAAGAAAAAGGGAATAGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATACAGATATGCAGCTTTTGAATGATGTCGAGAGAGGAAGACATTTGCAGAAGCAGAAAAAACGCAGACTTCAAGGGCGTGAAGATGAAGTTTTGGCAAAACTTGAAAAATTTAAAACTACCAAATCAGCAAAGGAGATACCCACAACTGTTGAATCTAAACATGCTAGTGGTGAGGAATTATCTGACTGGCGAAGTGTTAGCTTAAAATTTTCCCCCACAACTGGCAAGGACCGCATGGCTCGCACCGAGGATCCAAATGATTATGTTGTGCTTGATCCTCTTTTGGAAAAGGGGAAAGAGAAGTTCAATAAGATGCAAGCCAAACAAAAGAGACGGGAACGAGAATGGGCTGGAAAATCCCTTACTTGA 1500 0.422 MSTVYVLEPPTKGKVVVNTTRGPIDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRVIKDFLVQCGDPTGTGTGGESIYGDVFADEFHSRIKFKHRGLVAMANSGTPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKSDRPLDPAPKILSVEVLWNPFEDIVPRTLQKPQTKATNDTDGKDAKRKGVKNLNLLSFGEETEEEEKELTLVKKKIVSSHDVLNDPRLLKDENANNELSSSDSKLKRNLQLSVRDALNSKKEEPQKDSGADKLSHVDSSDDDEADFDSRMRMQILKKRKELDDLPPKPKMQNGRSRSSPEKPTMSRARSNSVSADEEDQPKVEKLSMKKKGIGSEARAERMANADTDMQLLNDVERGRHLQKQKKRRLQGREDEVLAKLEKFKTTKSAKEIPTTVESKHASGEELSDWRSVSLKFSPTTGKDRMARTEDPNDYVVLDPLLEKGKEKFNKMQAKQKRREREWAGKSLT 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09956 499 MobiDBLite consensus disorder prediction 180 200 - -
Vifa1g09956 499 MobiDBLite consensus disorder prediction 323 342 - -
Vifa1g09956 499 MobiDBLite consensus disorder prediction 418 463 - -
Vifa1g09956 499 MobiDBLite consensus disorder prediction 343 374 - -
Vifa1g09956 499 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Vifa1g09956 499 SUPERFAMILY Cyclophilin-like 14 184 IPR029000 -
Vifa1g09956 499 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Vifa1g09956 499 MobiDBLite consensus disorder prediction 268 321 - -
Vifa1g09956 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Vifa1g09956 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Vifa1g09956 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Vifa1g09956 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Vifa1g09956 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Vifa1g09956 499 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 218 IPR044666 -
Vifa1g09956 499 MobiDBLite consensus disorder prediction 476 499 - -
Vifa1g09956 499 CDD cyclophilin_CeCYP16-like 8 180 - -
Vifa1g09956 499 MobiDBLite consensus disorder prediction 268 403 - -
Vifa1g09956 499 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 180 - -
Vifa1g09956 499 MobiDBLite consensus disorder prediction 418 437 - -
Vifa1g09956 499 Gene3D - 2 183 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09956 Vifa-Chr1 1630207089 1630213922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09956 9 173 U-box Gene Family AT5G67530 47.879 2.99e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09956 K12737 - gmx:100793148 775.393