Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09955 ATGATTAGTTGTGAGAATGATGTGGTGAAGACAACATTAATACAGTTCCTGACACAGCTCAAAGGCCAGCAGAATAACAATTCTACTTTGAATTGGAAACCAGACACTGATCCCTGCAAGGATCACTGGAATGGTGTATACTGTGATGCTCAAATGTCTATCAAGAGGTTGAATCTTTACAGGTTCAATTTATCTGGAACTCTTGATGTTGCCTTGCTTTGTAACGTGCCGCCTCTAGCTGCATCTCTCACCTTTCTAAGTCTTGACGACAACAAAATCAGCGGCGGAATAGCATCCGAGATCGTAAACTGCAAACAACTCACTCGCCTTCACGTAAGTGGAAACCAGCTCGCCGGTAACCTTCCTGCTTCACTTGCAATGTTGAACAATTTGAAAAGACTAGACCTTTCTAATAACAAGTTTTCGGGACTGTTGCCAAACCTGGCTAGAATCTCAGGCCTCAATATGTTCCTAGCACAAAACAATAACCTCAGCGGAAATATCCCGACTTTTTATTTCCCCAATTTTGACCATTTCAATGTCTCTTTTAACAATTTCAGTGGCCAAATACCAGATGTACAAGGTCATTTCTTTGCAGACAGTTTTCTTGGTAATCCAGAACTATGTGGATATCCACTACAAAAAAATTGTACTAGTCAGATTCTGAGTAGTAGTGTTAGTAAAACATCAGAAGAAGAATCAAAAGCTCCTTCCAAAGAACAGATTTTGATATATTCAGGGTATGCTGCATTAGGTGTTATCATAATTCTTTTTGTAGTCCTAAAGATCTGTAGAAGCAAGAAGAGTGGAAAGAAAGCTGAAGCATTGTCGAACAATGATATCGAAAAACCGAGCTATGTTTCGAGTGAATCCAAAGCAGAAGATGTAAGCAAATCAGGATTTTCAATTTCCTCTGAATGTGGAATGGTCTCACAGCAATCACTTGTTGTTCTTTCAAAGCCAGTGGTGAGTGAATTGAAATTGGAGGAGTTGTTGAGAGCACCTGCTGAAATGATTGGGAGAGGAACCAATGGAAGTCTTTATAAAGTGATGCTAACAAATGGCGTAGTAGTTGTTGTAAAAAGGATTAAAGATTGGAGTATTTCTAGTGATGAATTCAAGCAAAGAATGCAACTATTGAATCAAGCAAAACATTCTCATGTTCTTCCACCTCTTGCTTTCTATTGTAACAAACAAGAGAAGCTTTTGGTCTATGAATATCAGCATAATGGAAGTTTGTTCAAGCTTTTACATGGAACTTCAAAAAAAACCTTTGATTGGAGCAGCAGACTTGGAATTGCATCAACAATAGCAGAAGCATTAGCTTTCATGCACCAAGAGCTTGGCCAACAAGGTATCATTCATGGAAACATGAAATCCTCAAACATTTTGATAAACAAAAACATGGAGCCTTGTATAAGTGAGTATGGTACTATGCCTCAGGATGGCCAACAAACTTCAACTTTTGCATTCAAGGAAGATGTTTATGGTTTTGGTGTTATTCTTCTTGAGCTTCTTACTGGAAAATTGGTGAAGAGTAATGGTATTGATTTGACTGATTGGGTTCAATCAGTTGTAAGAGAAGAATGGACAGGTGAAGTGTTTGATAGGTGTTTGTTGGCAGAGTATGCAAGTGAAGAGAGGATGGTTAATATGCTTCAAGTGGCTATAAGATGTGTTAATAGTTCATTAGAGGCAAGGCCAAGTATGAACCAAGTGGCTCTTATGATTAACACCATTAAAGATGAAGAGGAAAAATCATTGATTTACCAAGTTTGA 1779 0.3822 MISCENDVVKTTLIQFLTQLKGQQNNNSTLNWKPDTDPCKDHWNGVYCDAQMSIKRLNLYRFNLSGTLDVALLCNVPPLAASLTFLSLDDNKISGGIASEIVNCKQLTRLHVSGNQLAGNLPASLAMLNNLKRLDLSNNKFSGLLPNLARISGLNMFLAQNNNLSGNIPTFYFPNFDHFNVSFNNFSGQIPDVQGHFFADSFLGNPELCGYPLQKNCTSQILSSSVSKTSEEESKAPSKEQILIYSGYAALGVIIILFVVLKICRSKKSGKKAEALSNNDIEKPSYVSSESKAEDVSKSGFSISSECGMVSQQSLVVLSKPVVSELKLEELLRAPAEMIGRGTNGSLYKVMLTNGVVVVVKRIKDWSISSDEFKQRMQLLNQAKHSHVLPPLAFYCNKQEKLLVYEYQHNGSLFKLLHGTSKKTFDWSSRLGIASTIAEALAFMHQELGQQGIIHGNMKSSNILINKNMEPCISEYGTMPQDGQQTSTFAFKEDVYGFGVILLELLTGKLVKSNGIDLTDWVQSVVREEWTGEVFDRCLLAEYASEERMVNMLQVAIRCVNSSLEARPSMNQVALMINTIKDEEEKSLIYQV 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09955 592 Gene3D Ribonuclease Inhibitor 5 79 IPR032675 -
Vifa1g09955 592 Gene3D Ribonuclease Inhibitor 80 222 IPR032675 -
Vifa1g09955 592 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 78 168 - -
Vifa1g09955 592 Gene3D Phosphorylase Kinase; domain 1 301 407 - -
Vifa1g09955 592 ProSiteProfiles Leucine-rich repeat profile. 130 152 IPR001611 GO:0005515
Vifa1g09955 592 Pfam Protein kinase domain 337 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09955 592 Pfam Leucine rich repeat N-terminal domain 12 49 IPR013210 -
Vifa1g09955 592 ProSiteProfiles Protein kinase domain profile. 333 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09955 592 SUPERFAMILY L domain-like 33 195 - -
Vifa1g09955 592 Gene3D Transferase(Phosphotransferase) domain 1 408 483 - -
Vifa1g09955 592 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Vifa1g09955 592 Gene3D Transferase(Phosphotransferase) domain 1 484 591 - -
Vifa1g09955 592 PANTHER OS05G0588300 PROTEIN 11 582 - -
Vifa1g09955 592 SUPERFAMILY Protein kinase-like (PK-like) 337 576 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09955 Vifa-Chr1 1630203738 1630206162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09955 2 581 Receptor kinase-like Gene Family AT3G08680 32.905 2.98e-88 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g09955 Pkinase 3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09955 - - psat:127078038 1104.74