Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09942 ATGGCTGTGGCTGCACAATCTAATGCTGAGCTGTTGGAATGGCCAAAGAAAGATAAGCGCCGCTTCCTGCATGCTGTTTACCGTGTTGGTGATCTTGATCGCACCATCAACTTTTGGAATGAAGCTTTTGAGGAAAAGAGATGTTCGGAAGAGAAATATGCCAATGCTTTTCTAGGATTTGGCTCTGAAAAAACTAATTTTGTTGTGGAATTAACTTATAATTATGGAGTGACCTCCTATGATATTGGAACTGGCTTTGGACATTTTGCTATCGCAACTCCAGATGTCTACAAATTTGTTGAACACGCCCGGGCTAAGGGTGGAAATGTCACTAGGGAACCTGGTCCAGTTAGTGGTGGGTCAACTGTTATGGCCTTTGTGAAGGATCCTGATGGTTATGCTTTTGAAATTCTTGAAAGAGCTTCAACCCCTGAGCCATTATGCCAAGTAATGCTCCGTGTTGGTGACTTAGACCGCTCAATTGCCTTTTATGAAAGGACTTTGGGTTTGAAGATGGTGAGGAAGGTTGATAGACCTCAATACAAGTACACTTTAGCTATGCTTGGGTATGCAGAGGAGCACGAGACAGTTGTGTTGGAGCTGACATATAACTATGATGTCACTGAATACACCAAGGGAAATGGTTATGCACAGGTGGCTATTGGCACTGATGACGTATACAAGAGTGCTGAGGTAATCAACATAGTAACTCAAGAGCTTGGAGGGAAGATTACCAGGCAACCAGGGCCAATTCCTGGCCTTAACACAAAGATCACTTCTTTCTTGGATCCCGATGGTTGGAAAACAGTGTTGGTTGACAATCAAGATTTTCTGAAGGAGCTTGCTTGA 849 0.4346 MAVAAQSNAELLEWPKKDKRRFLHAVYRVGDLDRTINFWNEAFEEKRCSEEKYANAFLGFGSEKTNFVVELTYNYGVTSYDIGTGFGHFAIATPDVYKFVEHARAKGGNVTREPGPVSGGSTVMAFVKDPDGYAFEILERASTPEPLCQVMLRVGDLDRSIAFYERTLGLKMVRKVDRPQYKYTLAMLGYAEEHETVVLELTYNYDVTEYTKGNGYAQVAIGTDDVYKSAEVINIVTQELGGKITRQPGPIPGLNTKITSFLDPDGWKTVLVDNQDFLKELA 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09942 282 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 20 142 IPR029068 -
Vifa1g09942 282 PANTHER LACTOYLGLUTATHIONE LYASE 4 281 - -
Vifa1g09942 282 FunFam Lactoylglutathione lyase 143 282 - -
Vifa1g09942 282 ProSitePatterns Glyoxalase I signature 1. 149 170 IPR018146 GO:0004462|GO:0046872
Vifa1g09942 282 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 146 274 IPR037523 -
Vifa1g09942 282 Gene3D - 143 282 IPR029068 -
Vifa1g09942 282 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 23 137 IPR004360 -
Vifa1g09942 282 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 149 268 IPR004360 -
Vifa1g09942 282 ProSitePatterns Glyoxalase I signature 2. 83 95 IPR018146 GO:0004462|GO:0046872
Vifa1g09942 282 NCBIfam lactoylglutathione lyase 22 142 IPR004361 GO:0004462|GO:0046872
Vifa1g09942 282 Gene3D - 1 142 IPR029068 -
Vifa1g09942 282 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 147 273 IPR029068 -
Vifa1g09942 282 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 21 140 IPR037523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09942 Vifa-Chr1 1626852847 1626858447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09942 149 273 Calmodulin-binding Proteins AT1G08110 26.667 9.72e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09942 K01759 - gmx:100794901 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09942 1 1626852847 1626858447 Vifa1g09942 1 1626852847 1626858447 ECH
Vifa1g09942 1 1626852847 1626858447 Vifa4g04812 4 1519532675 1519534749 ECH
Vifa4g04812 4 1519532675 1519534749 Vifa1g09942 1 1626852847 1626858447 PCT