Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09940 ATGAAAGGTAGTGAAACTCAAATGTCTGTCAAAGAATCCTCATCTCAAACCATGTCTTCATCTTCATCTTCTCTTGTTAGCGGAGTTGTCGATAATAATAACTCTTCAAACCCGTCCGAGATGAGTCTAAAAGCACCTATGGTAAGACCTTATAGTCGGTCGAAAATGCCTCGACTTCGTTGGACACCAGATCTTCACCGTTGCTTTGTGCATGCAGTTCAAAAGCTTGAAAGAGAAGGAAGAGGGGTTACACCAAAGTTAATTTTACAACTAATGAATGTTAAAGGGCTTACTATATCTCATGTGAAAAGCCACCTTCAGATGTACAAGAGTATGAAACATGAGGAAATGAGTCAAGAAGCAAAGAAGAATATTATGGCAGCAAATTTATTAGCTTCCAGAATGATCTCCTCCTCAACCATGGTTCCAAGCTACCTACAAACTCCTGCCCAAACACAGAATGAACAGAAGAAGCACACTTACATCATCTTCAACGGTATTCTTAGCACTGTCCAAGCAAACAATAAGGACCAACAAGGATTCAAAGAATTAACCGCTAGAGGAAAGGAGGTGAATAAAAAAGAGACAGGTGATTTGTCTCTTGAGCTCACTCTCACTTGA 621 0.3994 MKGSETQMSVKESSSQTMSSSSSSLVSGVVDNNNSSNPSEMSLKAPMVRPYSRSKMPRLRWTPDLHRCFVHAVQKLEREGRGVTPKLILQLMNVKGLTISHVKSHLQMYKSMKHEEMSQEAKKNIMAANLLASRMISSSTMVPSYLQTPAQTQNEQKKHTYIIFNGILSTVQANNKDQQGFKELTARGKEVNKKETGDLSLELTLT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09940 206 MobiDBLite consensus disorder prediction 1 42 - -
Vifa1g09940 206 MobiDBLite consensus disorder prediction 1 49 - -
Vifa1g09940 206 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Vifa1g09940 206 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 111 IPR006447 GO:0003677
Vifa1g09940 206 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 30 157 IPR046955 GO:0003700
Vifa1g09940 206 FunFam Two-component response regulator 52 117 - -
Vifa1g09940 206 Gene3D - 52 115 - -
Vifa1g09940 206 Pfam Myb-like DNA-binding domain 59 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09940 Vifa-Chr1 1625651999 1625653470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09940 48 145 G2-like Transcription Factor Family AT2G42660 50.962 1.19e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g09940 Myb_DNA-binding 4.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09940 - - psat:127115844 297.36