Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09938 ATGTCTTCATCTTCATCTTCTCTTGTTAGCGGAGTTGTCGATAATAATAACTCTTCAAACCCGTCCGAGATGAGTCTAAAAGCACCTATGGTAAGACCTTATAGTCGCTCGAAAATGCCTCGACTTCGTTGGACACCAGATCTTCACCGTTGCTTTGTGCATGCAGTTCAAAAGCTTGAAAGAGAAGAAAGAGGGGCTACACCAAAGTTAATTTTACAACTAATGAATATTAAGGGGCTTACCATATCTCATGTGAAAAGCCACCTTCAGATGTACAGGAGTATGAAACATGAGGAGATGAGTCAAGAAGCAAAGAAGAATGTTATGGCAGCAAATTTATTAGCTTCCAGAATGATCTCTTCCTCACCTCTTGTTCCAACCTTCCTACAAACTCCTTCCCAAAGACAGAATGGTTATGAACCTGAGTCTTACATTAGAAATCAAAGTAATAAATCGGTTGTAATTTATGGCGGCGATGAACAGAAGAAGCACACTTACATAATCTTCGACGGTATTCTCAGTACTGTCCAAGCAAAAAAAAGAGACCAACAGAGATTCAAAGAAATAACTGCTAGAGGAAAGGAAGTGAATGAAAAAGAGACAGATGATTTGTCTCTTAAGCTTACTCTCACTTGA 636 0.3915 MSSSSSSLVSGVVDNNNSSNPSEMSLKAPMVRPYSRSKMPRLRWTPDLHRCFVHAVQKLEREERGATPKLILQLMNIKGLTISHVKSHLQMYRSMKHEEMSQEAKKNVMAANLLASRMISSSPLVPTFLQTPSQRQNGYEPESYIRNQSNKSVVIYGGDEQKKHTYIIFDGILSTVQAKKRDQQRFKEITARGKEVNEKETDDLSLKLTLT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09938 211 Pfam Myb-like DNA-binding domain 42 93 IPR001005 -
Vifa1g09938 211 Gene3D - 35 98 - -
Vifa1g09938 211 NCBIfam myb-like DNA-binding domain, SHAQKYF class 40 95 IPR006447 GO:0003677
Vifa1g09938 211 MobiDBLite consensus disorder prediction 1 32 - -
Vifa1g09938 211 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 19 141 IPR046955 GO:0003700
Vifa1g09938 211 SUPERFAMILY Homeodomain-like 38 95 IPR009057 -
Vifa1g09938 211 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g09938 211 FunFam Two-component response regulator 35 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09938 Vifa-Chr1 1625629520 1625631132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09938 31 124 G2-like Transcription Factor Family AT2G42660 55.000 2.36e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g09938 Myb_DNA-binding 8.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09938 - - psat:127115844 332.798